PanExplorer: a web-based tool for exploratory analysis and visualization of bacterial pan-genomes
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac504
Abstract: Abstract Motivation As pan-genome approaches are largely employed for bacterial comparative genomics and evolution analyses, but still difficult to be carried out by non-bioinformatician biologists, there is a need for an innovative tool facilitating the… read more here.
Keywords: web based; pan genomes; pan; bacterial pan ... See more keywords
Pan-genome analyses of model fungal species
Sign Up to like & getrecommendations! Published in 2019 at "Microbial Genomics"
DOI: 10.1099/mgen.0.000243
Abstract: The concept of the species ‘pan-genome’, the union of ‘core’ conserved genes and all ‘accessory’ non-conserved genes across all strains of a species, was first proposed in prokaryotes to account for intraspecific variability. Species pan-genomes… read more here.
Keywords: fungal species; species pan; pan genome; pan genomes ... See more keywords
Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes
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DOI: 10.1101/gr.276015.121
Abstract: The concept of pan-genome, which is the collection of all genomes from a population, has shown a great potential in genomics study, especially for crop sciences. The rice pan-genome constructed from the second-generation sequencing (SGS)… read more here.
Keywords: pan genomes; pan genome; rice; read sequencing ... See more keywords
BGDMdocker: a Docker workflow for data mining and visualization of bacterial pan-genomes and biosynthetic gene clusters
Sign Up to like & getrecommendations! Published in 2017 at "PeerJ"
DOI: 10.7717/peerj.3948
Abstract: Recently, Docker technology has received increasing attention throughout the bioinformatics community. However, its implementation has not yet been mastered by most biologists; accordingly, its application in biological research has been limited. In order to popularize… read more here.
Keywords: docker; pan genomes; visualization; genomes biosynthetic ... See more keywords