Metabolic pathway analysis and potential biomarker identification of beef spoilage based on untargeted metabolomics
Sign Up to like & getrecommendations! Published in 2025 at "Journal of the Science of Food and Agriculture"
DOI: 10.1002/jsfa.70187
Abstract: Chilled beef is valued for its nutrition and tenderness but is vulnerable to contamination and spoilage during refrigeration. This study applied non‐targeted metabolomics (ultra‐performance liquid chromatography‐quadrupole time‐of‐flight mass spectrometry (UPLC‐QTOF‐MS)) to track metabolite changes and… read more here.
Keywords: analysis potential; pathway analysis; spoilage; beef ... See more keywords
Summarizing RNA-Seq Data or Differentially Expressed Genes Using Gene Set, Network, or Pathway Analysis.
Sign Up to like & getrecommendations! Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1307-8_9
Abstract: The main purpose of pathway or gene set analysis methods is to provide mechanistic insight into the large amount of data produced in high-throughput studies. These tools were developed for gene expression analyses, but they… read more here.
Keywords: gene set; summarizing rna; pathway; pathway analysis ... See more keywords
Differential Pathway Analysis.
Sign Up to like & getrecommendations! Published in 2019 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-9057-3_7
Abstract: Integrating prior knowledge of pathway-level information can enhance power and facilitate interpretation of gene expression data analyses. Here, we provide a practical demonstration of the value of gene set or pathway enrichment testing and extend… read more here.
Keywords: analysis; biology; pathway analysis; gene ... See more keywords
A detailed pathway analysis of the chemical reaction system generating the Martian vertical ozone profile
Sign Up to like & getrecommendations! Published in 2017 at "Icarus"
DOI: 10.1016/j.icarus.2016.12.012
Abstract: Atmospheric chemical composition is crucial in determining a planet’s atmospheric structure, stability, and evolution. Attaining a quantitative understanding of the essential chemical mechanisms governing atmospheric composition is nontrivial due to complex interactions between chemical species.… read more here.
Keywords: chemical; pathway analysis; chemical reaction; profile ... See more keywords
Avoiding the Misuse of Pathway Analysis Tools in Environmental Metabolomics
Sign Up to like & getrecommendations! Published in 2022 at "Environmental Science & Technology"
DOI: 10.1021/acs.est.2c05588
Abstract: W the past 20 years, metabolomics has moved from an exciting innovation within the environmental sciences to something that is almost routine. It can be considered as a means to generate metabolite biomarkers, although it… read more here.
Keywords: pathway analysis; analysis; avoiding misuse; pathway ... See more keywords
Altered Serum Metabolite Profiling and Relevant Pathway Analysis in Rats Stimulated by Honeybee Venom: New Insight into Allergy to Honeybee Venom.
Sign Up to like & getrecommendations! Published in 2018 at "Journal of agricultural and food chemistry"
DOI: 10.1021/acs.jafc.7b04160
Abstract: To improve our understanding of the disturbed metabolic pathways and cellular responses triggered by honeybee venom stimulation, we compared the changes in serum metabolites in rats, either stimulated or not by honeybee venom, by performing… read more here.
Keywords: venom stimulation; venom; honeybee venom; stimulated honeybee ... See more keywords
Addressing reproducibility in single-laboratory phenotyping experiments
Sign Up to like & getrecommendations! Published in 2017 at "Nature Methods"
DOI: 10.1038/nmeth.4259
Abstract: high resolution MS data directly onto pathways, (ii) cross-integration of genomic and proteomic data and (iii) metabolite identity verification via data-dependent MS/MS analysis, either separately or as part of the autonomous workflow5. Our multi-omic analysis… read more here.
Keywords: integration; analysis; supplementary fig; study ... See more keywords
Distinct expression profiles of peptides in placentae from preeclampsia and normal pregnancies
Sign Up to like & getrecommendations! Published in 2020 at "Scientific Reports"
DOI: 10.1038/s41598-020-74840-0
Abstract: This study sought to identify potential bioactive peptides from the placenta that are involved in preeclampsia (PE) to obtain information about the prediction, diagnosis and treatment of PE. The liquid chromatography/mass spectrometry was used to… read more here.
Keywords: expression profiles; preeclampsia; pathway analysis; distinct expression ... See more keywords
Evaluation of transcriptomic changes after photobiomodulation in spinal cord injury
Sign Up to like & getrecommendations! Published in 2025 at "Scientific Reports"
DOI: 10.1038/s41598-025-87300-4
Abstract: Spinal cord injury (SCI) is a significant cause of lifelong disability, with no available disease-modifying treatments to promote neuroprotection and axon regeneration after injury. Photobiomodulation (PBM) is a promising therapy which has proven effective at… read more here.
Keywords: spinal cord; pathway analysis; cord injury; injury ... See more keywords
Pathway Analysis of Patients with Severe Acute Respiratory Syndrome.
Sign Up to like & getrecommendations! Published in 2022 at "Drug research"
DOI: 10.1055/a-1886-2094
Abstract: BACKGROUND Coronaviruses are emerging threats for human health, as demonstrated by the ongoing coronavirus disease 2019 (COVID-19) pandemic that is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). SARS-CoV-2 is closely related to SARS-CoV-1,… read more here.
Keywords: severe acute; pathway analysis; sars cov; analysis ... See more keywords
Effects of terraces and steps on the 4H-SiC BPD-TED conversion rate: A reaction pathway analysis
Sign Up to like & getrecommendations! Published in 2024 at "Journal of Applied Physics"
DOI: 10.1063/5.0185938
Abstract: The practical use of 4H-SiC as a semiconductor material alternative to Si has been investigated by several researchers. However, a key challenge impeding its practical implementation is the elimination of killer defects in the epitaxial… read more here.
Keywords: pathway analysis; conversion; step; conversion rate ... See more keywords