Phage Genome Annotation Using the RAST Pipeline.
Sign Up to like & getrecommendations! Published in 2018 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-7343-9_17
Abstract: Phages are complex biomolecular machineries that have to survive in a bacterial world. Phage genomes show many adaptations to their lifestyle such as shorter genes, reduced capacity for redundant DNA sequences, and the inclusion of… read more here.
Keywords: pipeline; phage genome; phage; annotation ... See more keywords
DPProm: A Two-Layer Predictor for Identifying Promoters and Their Types on Phage Genome Using Deep Learning
Sign Up to like & getrecommendations! Published in 2022 at "IEEE Journal of Biomedical and Health Informatics"
DOI: 10.1109/jbhi.2022.3193224
Abstract: With the number of phage genomes increasing, it is urgent to develop new bioinformatics methods for phage genome annotation. Promoter, a DNA region, is important for gene transcriptional regulation. In the era of post-genomics, the… read more here.
Keywords: phage genome; two layer; promoters types; layer ... See more keywords
Pseudomonas-tailed lytic phages: genome mechanical analysis and putative correlation with virion morphogenesis yield.
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DOI: 10.2217/fmb-2021-0293
Abstract: Aim: To unveil a putative correlation between phage genome flexibility and virion morphogenesis yield. Materials & methods: A deeper analysis of the mechanical properties of three Pseudomonas aeruginosa lytic phage genomes was undertaken, together with… read more here.
Keywords: virion; phage genome; morphogenesis yield; putative correlation ... See more keywords