Phasing and imputation of single nucleotide polymorphism data of missing parents of biparental plant populations
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DOI: 10.1002/csc2.20409
Abstract: Abstract This paper presents an extension to a heuristic method for phasing and imputation of genotypes of descendants in biparental populations so that it can phase and impute genotypes of parents that are ungenotyped or… read more here.
Keywords: imputation; imputed genotypes; imputation accuracy; parent ... See more keywords
EagleImp: fast and accurate genome-wide phasing and imputation in a single tool
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1101/2022.01.11.475810
Abstract: Background Reference-based phasing and genotype imputation algorithms have been developed with sublinear theoretical runtime behaviour, but runtimes are still high in practice when large genome-wide reference datasets are used. Methods We developed EagleImp, a software… read more here.
Keywords: imputation single; eagleimp; reference; genome wide ... See more keywords