Phylogenetic Reconstruction Based on Synteny Block and Gene Adjacencies
Sign Up to like & getrecommendations! Published in 2020 at "Molecular Biology and Evolution"
DOI: 10.1093/molbev/msaa114
Abstract: Abstract Gene order can be used as an informative character to reconstruct phylogenetic relationships between species independently from the local information present in gene/protein sequences. PhyChro is a reconstruction method based on chromosomal rearrangements, applicable… read more here.
Keywords: reconstruction; phylogenetic reconstruction; synteny block; partial splits ... See more keywords
Utilizing paralogues for phylogenetic reconstruction has the potential to increase species tree support and reduce gene tree discordance in target enrichment data
Sign Up to like & getrecommendations! Published in 2022 at "Molecular Ecology Resources"
DOI: 10.1111/1755-0998.13684
Abstract: The analysis of target enrichment data in phylogenetics lacks optimization toward using paralogues for phylogenetic reconstruction. We developed a novel approach of detecting paralogues and utilizing them for phylogenetic tree inference, by retrieving both ortho‐… read more here.
Keywords: gene tree; paralogues phylogenetic; enrichment data; gene ... See more keywords
Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study
Sign Up to like & getrecommendations! Published in 2018 at "Wellcome Open Research"
DOI: 10.12688/wellcomeopenres.14265.2
Abstract: Background: Phylogenetic reconstruction is a necessary first step in many analyses which use whole genome sequence data from bacterial populations. There are many available methods to infer phylogenies, and these have various advantages and disadvantages,… read more here.
Keywords: evaluation phylogenetic; reconstruction methods; topology; phylogenetic reconstruction ... See more keywords