Discovery and Characterization of a Novel Chitosanase from Paenibacillus dendritiformis by Phylogeny-Based Enzymatic Product Specificity Prediction.
Sign Up to like & getrecommendations! Published in 2018 at "Journal of agricultural and food chemistry"
DOI: 10.1021/acs.jafc.7b06067
Abstract: In the process of genome mining for novel chitosanases by phylogeny-based enzymatic product specificity prediction, a gene named Csn-PD from Paenibacillus dendritiformis was discovered. The enzyme was classified as a member of the GH46 family… read more here.
Keywords: phylogeny based; product specificity; product; enzymatic product ... See more keywords
A new molecular phylogeny-based taxonomy of parasitic barnacles (Crustacea: Cirripedia: Rhizocephala)
Sign Up to like & getrecommendations! Published in 2019 at "Zoological Journal of the Linnean Society"
DOI: 10.1093/zoolinnean/zlz140
Abstract: © Zoological Journal of the Linnean Society 2019, XX, 1–22 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in… read more here.
Keywords: phylogeny based; based taxonomy; new molecular; molecular phylogeny ... See more keywords
Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes
Sign Up to like & getrecommendations! Published in 2017 at "Royal Society Open Science"
DOI: 10.1098/rsos.170315
Abstract: Precision and reliability of barcode-based biodiversity assessment can be affected at several steps during acquisition and analysis of data. Identification of operational taxonomic units (OTUs) is one of the crucial steps in the process and… read more here.
Keywords: phylogeny based; marine; tree based; alignment based ... See more keywords
EukRef‐Ciliophora: a manually curated, phylogeny‐based database of small subunit rRNA gene sequences of ciliates
Sign Up to like & getrecommendations! Published in 2018 at "Environmental Microbiology"
DOI: 10.1111/1462-2920.14264
Abstract: High-throughput sequencing (HTS) surveys, among the most common approaches currently used in environmental microbiology, require reliable reference databases to be correctly interpreted. The EukRef Initiative (eukref.org) is a community effort to manually screen available small… read more here.
Keywords: gene sequences; phylogeny based; microbiology; database ... See more keywords
Phylogeny-based assignment of functional traits to DNA barcodes outperforms distance-based, in a comparison of approaches.
Sign Up to like & getrecommendations! Published in 2023 at "Molecular ecology resources"
DOI: 10.1111/1755-0998.13813
Abstract: The full potential for using DNA barcodes for profiling functional trait diversity has yet to be determined in plants and animals; thus, we outline a general framework for quantifying functional trait diversity of insect community… read more here.
Keywords: trait; distance; dna barcodes; phylogeny based ... See more keywords
A phylogeny based on cytochrome-c oxidase gene sequences identifies sympatric Ichthyophonus genotypes in the NE Pacific Ocean.
Sign Up to like & getrecommendations! Published in 2022 at "Diseases of aquatic organisms"
DOI: 10.3354/dao03677
Abstract: In recent decades, evidence has accumulated to suggest that the widespread and highly variable parasite Ichthyophonus hoferi is actually a species complex. Highly plastic morphology and a general lack of defining structures has contributed to… read more here.
Keywords: phylogeny based; gene sequences; pacific ocean; cytochrome oxidase ... See more keywords
Context-Aware Phylogenetic Trees for Phylogeny-Based Taxonomy Visualization
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2022.891240
Abstract: Sustained efforts in next-generation sequencing technologies are changing the field of taxonomy. The increase in the number of resolved genomes has made the traditional taxonomy of species antiquated. With phylogeny-based methods, taxonomies are being updated… read more here.
Keywords: phylogenetic trees; visualization; aware phylogenetic; phylogeny based ... See more keywords