A pipeline for copy number profiling of single circulating tumor cells to assess intra-patient tumor heterogeneity.
Sign Up to like & getrecommendations! Published in 2021 at "Molecular oncology"
DOI: 10.1002/1878-0261.13174
Abstract: Intra-patient tumor heterogeneity is likely a major determinant of clinical outcome in cancer patients. To assess heterogeneity in a minimally invasive manner, methods to perform single circulating tumor cell (CTC) genomics at high resolution are… read more here.
Keywords: tumor; patient tumor; heterogeneity; pipeline ... See more keywords
A pipeline to link meteorological information and TGFs detected by AGILE
Sign Up to like & getrecommendations! Published in 2017 at "Journal of Geophysical Research"
DOI: 10.1002/2016ja023137
Abstract: Terrestrial gamma ray flashes (TGFs) are brief (approximately hundreds of microseconds) intense gamma ray emissions coming from Earth’s atmosphere (∼15 km above sea level), correlated with thunderstorms and atmospheric electric activity. Since their unexpected discovery… read more here.
Keywords: gamma ray; pipeline; time; meteorological information ... See more keywords
PhyloHerb: A high‐throughput phylogenomic pipeline for processing genome skimming data
Sign Up to like & getrecommendations! Published in 2022 at "Applications in Plant Sciences"
DOI: 10.1002/aps3.11475
Abstract: Abstract Premise The application of high‐throughput sequencing, especially to herbarium specimens, is rapidly accelerating biodiversity research. Low‐coverage sequencing of total genomic DNA (genome skimming) is particularly promising and can simultaneously recover the plastid, mitochondrial, and… read more here.
Keywords: genome skimming; high throughput; phyloherb high; throughput phylogenomic ... See more keywords
An automated pipeline for supervised classification of petal color from citizen science photographs
Sign Up to like & getrecommendations! Published in 2023 at "Applications in Plant Sciences"
DOI: 10.1002/aps3.11505
Abstract: Abstract Premise Petal color is an ecologically important trait, and uncovering color variation over a geographic range, particularly in species with large distributions and/or short bloom times, requires extensive fieldwork. We have developed an alternative… read more here.
Keywords: color; classification; pipeline; citizen science ... See more keywords
A comprehensive pipeline for multi-resolution modeling of the mitral valve: Validation, computational efficiency, and predictive capability.
Sign Up to like & getrecommendations! Published in 2018 at "International journal for numerical methods in biomedical engineering"
DOI: 10.1002/cnm.2921
Abstract: Multiple studies have demonstrated that the pathological geometries unique to each patient can affect the durability of mitral valve (MV) repairs. While computational modeling of the MV is a promising approach to improve the surgical… read more here.
Keywords: resolution; pipeline; comprehensive pipeline; mitral valve ... See more keywords
A pipeline for effectively developing highly polymorphic simple sequence repeats markers based on multi‐sample genomic data
Sign Up to like & getrecommendations! Published in 2022 at "Ecology and Evolution"
DOI: 10.1002/ece3.8705
Abstract: Abstract Simple sequence repeats (SSRs) are widely used genetic markers in ecology, evolution, and conservation even in the genomics era, while a general limitation to their application is the difficulty of developing polymorphic SSR markers.… read more here.
Keywords: simple sequence; highly polymorphic; sequence repeats; genomic data ... See more keywords
Towards an optimised processing pipeline for diffusion magnetic resonance imaging data: Effects of artefact corrections on diffusion metrics and their age associations in UK Biobank
Sign Up to like & getrecommendations! Published in 2019 at "Human Brain Mapping"
DOI: 10.1002/hbm.24691
Abstract: Increasing interest in the structural and functional organisation of the human brain encourages the acquisition of big data sets comprising multiple neuroimaging modalities, often accompanied by additional information obtained from health records, cognitive tests, biomarkers… read more here.
Keywords: resonance imaging; diffusion; pipeline; processing pipeline ... See more keywords
mGluR5 and GABAA receptor-specific parametric PET atlas construction-PET/MR data processing pipeline, validation, and application.
Sign Up to like & getrecommendations! Published in 2022 at "Human brain mapping"
DOI: 10.1002/hbm.25778
Abstract: The glutamate and γ-aminobutyric acid neuroreceptor subtypes mGluR5 and GABAA are hypothesized to be involved in the development of a variety of psychiatric diseases. However, detailed information relating to their in vivo distribution is generally… read more here.
Keywords: mglur5 gabaa; pipeline; construction; pet data ... See more keywords
Evaluation of a whole‐exome sequencing pipeline and benchmarking of causal germline variant prioritizers
Sign Up to like & getrecommendations! Published in 2022 at "Human Mutation"
DOI: 10.1002/humu.24459
Abstract: Most causal variants of Mendelian diseases are exonic. Whole‐exome sequencing (WES) has become the diagnostic gold standard, but causative variant prioritization constitutes a bottleneck. Here we assessed an in‐house sample‐to‐sequence pipeline and benchmarked free prioritization… read more here.
Keywords: causal variants; exome sequencing; pipeline; whole exome ... See more keywords
Reimagining the pipeline: Saturday Academy at New York University College of Dentistry goes virtual.
Sign Up to like & getrecommendations! Published in 2021 at "Journal of dental education"
DOI: 10.1002/jdd.12624
Abstract: PURPOSE/OBJECTIVES This study describes and evaluates efforts to transition an established pre-dental pipeline program to a remote platform, in response to the coronavirus disease 2019 pandemic. METHODS The semester-long pipeline program, Saturday Academy at New… read more here.
Keywords: college; pipeline; program; saturday academy ... See more keywords
A quick pipeline for the isolation of 3D cell culture‐derived extracellular vesicles
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Extracellular Vesicles"
DOI: 10.1002/jev2.12273
Abstract: Abstract Recent advances in cell biology research regarding extracellular vesicles have highlighted an increasing demand to obtain 3D cell culture‐derived EVs, because they are considered to more accurately represent EVs obtained in vivo. However, there… read more here.
Keywords: culture; cell culture; cell; extracellular vesicles ... See more keywords