A pipeline for copy number profiling of single circulating tumor cells to assess intra-patient tumor heterogeneity.
Sign Up to like & getrecommendations! Published in 2021 at "Molecular oncology"
DOI: 10.1002/1878-0261.13174
Abstract: Intra-patient tumor heterogeneity is likely a major determinant of clinical outcome in cancer patients. To assess heterogeneity in a minimally invasive manner, methods to perform single circulating tumor cell (CTC) genomics at high resolution are… read more here.
Keywords: tumor; patient tumor; heterogeneity; pipeline ... See more keywords
A pipeline to link meteorological information and TGFs detected by AGILE
Sign Up to like & getrecommendations! Published in 2017 at "Journal of Geophysical Research"
DOI: 10.1002/2016ja023137
Abstract: Terrestrial gamma ray flashes (TGFs) are brief (approximately hundreds of microseconds) intense gamma ray emissions coming from Earth’s atmosphere (∼15 km above sea level), correlated with thunderstorms and atmospheric electric activity. Since their unexpected discovery… read more here.
Keywords: gamma ray; pipeline; time; meteorological information ... See more keywords
Automated Image Segmentation and Processing Pipeline Applied to X‐Ray Computed Tomography Studies of Pitting Corrosion in Aluminum Wires
Sign Up to like & getrecommendations! Published in 2025 at "Advanced Engineering Materials"
DOI: 10.1002/adem.202401699
Abstract: Understanding pitting corrosion is critical, yet its kinetics and morphology remain challenging to study from X‐ray computed tomography (XCT) due to manual segmentation barriers. To address this, an automated pipeline leveraging deep learning for efficient… read more here.
Keywords: pitting corrosion; segmentation; ray computed; pipeline ... See more keywords
RESP2: An Uncertainty Aware Multi‐Target Multi‐Property Optimization AI Pipeline for Antibody Discovery
Sign Up to like & getrecommendations! Published in 2025 at "Advanced Science"
DOI: 10.1002/advs.202504350
Abstract: Discovery of therapeutic antibodies against infectious disease pathogens presents distinct challenges. Ideal candidates must possess not only the properties required for any therapeutic antibody (e.g., specificity, low immunogenicity) but also high affinity to many mutants… read more here.
Keywords: pipeline; resp2; antibody discovery; pipeline antibody ... See more keywords
An integrated passive acoustic monitoring and deep learning pipeline for black‐and‐white ruffed lemurs (Varecia variegata) in Ranomafana National Park, Madagascar
Sign Up to like & getrecommendations! Published in 2024 at "American Journal of Primatology"
DOI: 10.1002/ajp.23599
Abstract: The urgent need for effective wildlife monitoring solutions in the face of global biodiversity loss has resulted in the emergence of conservation technologies such as passive acoustic monitoring (PAM). While PAM has been extensively used… read more here.
Keywords: white ruffed; acoustic monitoring; pipeline; black white ... See more keywords
PhyloHerb: A high‐throughput phylogenomic pipeline for processing genome skimming data
Sign Up to like & getrecommendations! Published in 2022 at "Applications in Plant Sciences"
DOI: 10.1002/aps3.11475
Abstract: Abstract Premise The application of high‐throughput sequencing, especially to herbarium specimens, is rapidly accelerating biodiversity research. Low‐coverage sequencing of total genomic DNA (genome skimming) is particularly promising and can simultaneously recover the plastid, mitochondrial, and… read more here.
Keywords: genome skimming; high throughput; phyloherb high; throughput phylogenomic ... See more keywords
An automated pipeline for supervised classification of petal color from citizen science photographs
Sign Up to like & getrecommendations! Published in 2023 at "Applications in Plant Sciences"
DOI: 10.1002/aps3.11505
Abstract: Abstract Premise Petal color is an ecologically important trait, and uncovering color variation over a geographic range, particularly in species with large distributions and/or short bloom times, requires extensive fieldwork. We have developed an alternative… read more here.
Keywords: color; classification; pipeline; citizen science ... See more keywords
A comprehensive pipeline for multi-resolution modeling of the mitral valve: Validation, computational efficiency, and predictive capability.
Sign Up to like & getrecommendations! Published in 2018 at "International journal for numerical methods in biomedical engineering"
DOI: 10.1002/cnm.2921
Abstract: Multiple studies have demonstrated that the pathological geometries unique to each patient can affect the durability of mitral valve (MV) repairs. While computational modeling of the MV is a promising approach to improve the surgical… read more here.
Keywords: resolution; pipeline; comprehensive pipeline; mitral valve ... See more keywords
Quantitative image analysis pipeline for detecting circulating hybrid cells in immunofluorescence images with human‐level accuracy
Sign Up to like & getrecommendations! Published in 2024 at "Cytometry Part A"
DOI: 10.1002/cyto.a.24826
Abstract: Circulating hybrid cells (CHCs) are a newly discovered, tumor‐derived cell population found in the peripheral blood of cancer patients and are thought to contribute to tumor metastasis. However, identifying CHCs by immunofluorescence (IF) imaging of… read more here.
Keywords: pipeline; analysis; hybrid cells; image analysis ... See more keywords
A pipeline for effectively developing highly polymorphic simple sequence repeats markers based on multi‐sample genomic data
Sign Up to like & getrecommendations! Published in 2022 at "Ecology and Evolution"
DOI: 10.1002/ece3.8705
Abstract: Abstract Simple sequence repeats (SSRs) are widely used genetic markers in ecology, evolution, and conservation even in the genomics era, while a general limitation to their application is the difficulty of developing polymorphic SSR markers.… read more here.
Keywords: simple sequence; highly polymorphic; sequence repeats; genomic data ... See more keywords
Towards an optimised processing pipeline for diffusion magnetic resonance imaging data: Effects of artefact corrections on diffusion metrics and their age associations in UK Biobank
Sign Up to like & getrecommendations! Published in 2019 at "Human Brain Mapping"
DOI: 10.1002/hbm.24691
Abstract: Increasing interest in the structural and functional organisation of the human brain encourages the acquisition of big data sets comprising multiple neuroimaging modalities, often accompanied by additional information obtained from health records, cognitive tests, biomarkers… read more here.
Keywords: resonance imaging; diffusion; pipeline; processing pipeline ... See more keywords