Grenepipe: a Flexible, Scalable and Reproducible Pipeline to Automate Variant Calling from Sequence Reads
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DOI: 10.1093/bioinformatics/btac600
Abstract: SUMMARY We developed grenepipe, an all-in-one Snakemake workflow to streamline the data processing from raw high-throughput sequencing data of individuals or populations to genotype variant calls. Our pipeline offers a range of popular software tools… read more here.
Keywords: scalable reproducible; grenepipe flexible; reproducible pipeline; pipeline automate ... See more keywords