PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures
Sign Up to like & getrecommendations! Published in 2018 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkx1321
Abstract: Abstract Plasmids are mobile genetics elements that play an important role in the environmental adaptation of microorganisms. Although plasmids are usually analyzed in cultured microorganisms, there is a need for methods that allow for the… read more here.
Keywords: data using; plasmid sequences; plasflow predicting; sequences metagenomic ... See more keywords
Recovery of small plasmid sequences via Oxford Nanopore sequencing.
Sign Up to like & getrecommendations! Published in 2021 at "Microbial genomics"
DOI: 10.1099/mgen.0.000631
Abstract: Oxford Nanopore Technologies (ONT) sequencing platforms currently offer two approaches to whole-genome native-DNA library preparation: ligation and rapid. In this study, we compared these two approaches for bacterial whole-genome sequencing, with a specific aim of… read more here.
Keywords: read sets; ligation; plasmid sequences; oxford nanopore ... See more keywords
Long read genome assemblers struggle with small plasmids.
Sign Up to like & getrecommendations! Published in 2023 at "Microbial genomics"
DOI: 10.1099/mgen.0.001024
Abstract: Whole-genome sequencing has become a preferred method for studying bacterial plasmids, as it is generally assumed to capture the entire genome. However, long-read genome assemblers have been shown to sometimes miss plasmid sequences - an… read more here.
Keywords: plasmid sequences; plasmid recovery; genome assemblers; genome ... See more keywords