Population genomic analyses support sympatric origins of parapatric morphs in a salamander
Sign Up to like & getrecommendations! Published in 2022 at "Ecology and Evolution"
DOI: 10.1002/ece3.9537
Abstract: Abstract In numerous clades, divergent sister species have largely non‐overlapping geographic ranges. This pattern presumably arises because species diverged in allopatry or parapatry, prior to a subsequent contact. Here, we provide population‐genomic evidence for the… read more here.
Keywords: salamander; pure; population genomic; long island ... See more keywords
Sponge diversification in marine lakes: Implications for phylogeography and population genomic studies on sponges
Sign Up to like & getrecommendations! Published in 2023 at "Ecology and Evolution"
DOI: 10.1002/ece3.9945
Abstract: Abstract The relative influence of geography, currents, and environment on gene flow within sessile marine species remains an open question. Detecting subtle genetic differentiation at small scales is challenging in benthic populations due to large… read more here.
Keywords: marine lakes; population genomic; sponge diversification; diversification marine ... See more keywords
Factor analysis of ancient population genomic samples
Sign Up to like & getrecommendations! Published in 2020 at "Nature Communications"
DOI: 10.1038/s41467-020-18335-6
Abstract: The recent years have seen a growing number of studies investigating evolutionary questions using ancient DNA. To address these questions, one of the most frequently-used method is principal component analysis (PCA). When PCA is applied… read more here.
Keywords: ancient population; analysis; factor analysis; analysis ancient ... See more keywords
Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement.
Sign Up to like & getrecommendations! Published in 2021 at "Nature biotechnology"
DOI: 10.1038/s41587-021-01058-4
Abstract: Aegilops tauschii, the diploid wild progenitor of the D subgenome of bread wheat, is a reservoir of genetic diversity for improving bread wheat performance and environmental resilience. Here we sequenced 242 Ae. tauschii accessions and… read more here.
Keywords: analysis aegilops; wheat; aegilops tauschii; population genomic ... See more keywords
The Pop-Gen Pipeline Platform: A Software Platform for Population Genomic Analyses
Sign Up to like & getrecommendations! Published in 2021 at "Molecular Biology and Evolution"
DOI: 10.1093/molbev/msab113
Abstract: Abstract The Pop-Gen Pipeline Platform (PPP) is a software platform for population genomic analyses. The PPP was designed as a collection of scripts that facilitate common population genomic workflows in a consistent and standardized Python… read more here.
Keywords: gen pipeline; population genomic; platform; population ... See more keywords
HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets
Sign Up to like & getrecommendations! Published in 2023 at "Molecular Biology and Evolution"
DOI: 10.1093/molbev/msad027
Abstract: Abstract Genomic regions under positive selection harbor variation linked for example to adaptation. Most tools for detecting positively selected variants have computational resource requirements rendering them impractical on population genomic datasets with hundreds of thousands… read more here.
Keywords: haploblocks efficient; positive selection; population genomic; genomic datasets ... See more keywords
A population‐genomic approach for estimating selection on polygenic traits in heterogeneous environments
Sign Up to like & getrecommendations! Published in 2021 at "Molecular Ecology Resources"
DOI: 10.1111/1755-0998.13371
Abstract: Strong selection can cause rapid evolutionary change, but temporal fluctuations in the form, direction and intensity of selection can limit net evolutionary change over longer time periods. Fluctuating selection could affect molecular diversity levels and… read more here.
Keywords: selection polygenic; method; selection; population genomic ... See more keywords
Population genomic, olfactory, dietary, and gut microbiota analyses demonstrate the unique evolutionary trajectory of feral pigs.
Sign Up to like & getrecommendations! Published in 2021 at "Molecular ecology"
DOI: 10.1111/mec.16238
Abstract: Domestication is an intriguing evolutionary process. Many domestic populations are subjected to strong human-mediated selection, and when some individuals return to the wild, they are again subjected to selective forces associated with new environments. Generally,… read more here.
Keywords: genomic olfactory; olfactory dietary; population genomic; gut microbiota ... See more keywords
Combining GWAS and population genomic analyses to characterize coevolution in a legume-rhizobia symbiosis.
Sign Up to like & getrecommendations! Published in 2022 at "Molecular ecology"
DOI: 10.1111/mec.16602
Abstract: The mutualism between legumes and rhizobia is clearly the product of past coevolution. However, the nature of ongoing evolution between these partners is less clear. To characterize the nature of recent coevolution between legumes and… read more here.
Keywords: population genomic; coevolution; host; selection ... See more keywords
Investigating Psychological Impact after Receiving Genetic Risk Results—A Survey of Participants in a Population Genomic Screening Program
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Personalized Medicine"
DOI: 10.3390/jpm12121943
Abstract: Genomic screening programs have potential to benefit individuals who may not be clinically ascertained, but little is known about the psychological impact of receiving genetic results in this setting. The current study sought to further… read more here.
Keywords: receiving genetic; psychological impact; population genomic; impact receiving ... See more keywords
Population Genomic Screening for Three Common Hereditary Conditions
Sign Up to like & getrecommendations! Published in 2023 at "Annals of Internal Medicine"
DOI: 10.7326/m22-0846
Abstract: BACKGROUND The cost-effectiveness of screening the U.S. population for Centers for Disease Control and Prevention (CDC) Tier 1 genomic conditions is unknown. OBJECTIVE To estimate the cost-effectiveness of simultaneous genomic screening for Lynch syndrome (LS),… read more here.
Keywords: cost effectiveness; cost; population genomic; genomic screening ... See more keywords