Reconstructing Dipsacales phylogeny using Angiosperms353: issues and insights
Sign Up to like & getrecommendations! Published in 2021 at "American Journal of Botany"
DOI: 10.1002/ajb2.1695
Abstract: Premise Phylogenetic relationships within major angiosperm clades are increasingly well resolved, but largely informed by plastid data. Areas of poor resolution persist within the Dipsacales, including placement of Heptacodium and Zabelia, and relationships within the… read more here.
Keywords: angiosperms353 probe; relationships within; phylogeny using; dipsacales phylogeny ... See more keywords
An updated and extended version of the Melastomataceae probe set for target capture
Sign Up to like & getrecommendations! Published in 2024 at "Applications in Plant Sciences"
DOI: 10.1002/aps3.11564
Abstract: Abstract Premise A probe set was previously designed to target 384 nuclear loci in the Melastomataceae family; however, when trying to use it, we encountered several practical and conceptual problems, such as the presence of… read more here.
Keywords: version; probe set; updated extended; target ... See more keywords
Compositae‐ParaLoss‐1272: A complementary sunflower‐specific probe set reduces paralogs in phylogenomic analyses of complex systems
Sign Up to like & getrecommendations! Published in 2024 at "Applications in Plant Sciences"
DOI: 10.1002/aps3.11568
Abstract: Abstract Premise A family‐specific probe set for sunflowers, Compositae‐1061, enables family‐wide phylogenomic studies and investigations at lower taxonomic levels, but may lack resolution at genus to species levels, especially in groups complicated by polyploidy and… read more here.
Keywords: paraloss 1272; compositae paraloss; probe set; compositae 1061 ... See more keywords
Phylogenetics of moth-like butterflies (Papilionoidea: Hedylidae) based on a new 13-locus target capture probe set.
Sign Up to like & getrecommendations! Published in 2018 at "Molecular phylogenetics and evolution"
DOI: 10.1016/j.ympev.2018.06.002
Abstract: The Neotropical moth-like butterflies (Hedylidae) are perhaps the most unusual butterfly family. In addition to being species-poor, this family is predominantly nocturnal and has anti-bat ultrasound hearing organs. Evolutionary relationships among the 36 described species… read more here.
Keywords: target capture; probe; moth like; probe set ... See more keywords
Structure-Based Design of a Chemical Probe Set for the 5-HT5A Serotonin Receptor.
Sign Up to like & getrecommendations! Published in 2022 at "Journal of medicinal chemistry"
DOI: 10.1021/acs.jmedchem.1c02031
Abstract: The 5-HT5A receptor (5-HT5AR), for which no selective agonists and a few antagonists exist, remains the least understood serotonin receptor. A single commercial antagonist, SB-699551, has been widely used to investigate the 5-HT5AR function in… read more here.
Keywords: chemical probe; probe; structure based; serotonin receptor ... See more keywords
Steric Hindrance On-Off Mass-Tagged Probe Set Enables Detection of Protein Homodimer in Living Cells.
Sign Up to like & getrecommendations! Published in 2022 at "ACS applied materials & interfaces"
DOI: 10.1021/acsami.2c15010
Abstract: The major challenge in the detection of protein homodimers is that the identical monomers in a homodimer are indistinguishable using most conventional methods and cannot be sequentially recognized. In this study, a steric hindrance on-off… read more here.
Keywords: probe set; steric hindrance; detection; hindrance ... See more keywords
Evaluation of red and near infrared fluorescent silver nanoclusters as potential in vivo indicators of tight junction opening
Sign Up to like & getrecommendations! Published in 2017 at "RSC Advances"
DOI: 10.1039/c7ra05561g
Abstract: Tight junctions (TJs) play a key role in regulating permeability to liquids, ions and larger solutes through the paracellular route. To demonstrate TJ structure changes by measuring paracellular flux is challenging for understanding biological functions… read more here.
Keywords: tight junction; probe set; silver nanoclusters;
UnFATE: A Comprehensive Probe Set and Bioinformatics Pipeline for Phylogeny Reconstruction and Multilocus Barcoding of Filamentous Ascomycetes (Ascomycota, Pezizomycotina).
Sign Up to like & getrecommendations! Published in 2025 at "Systematic biology"
DOI: 10.1093/sysbio/syaf011
Abstract: Abstract The subphylum Pezizomycotina (filamentous ascomycetes) is the largest clade within Ascomycota. Despite the importance of this group of fungi, our understanding of their evolution is still limited due to insufficient taxon sampling. Although next-generation… read more here.
Keywords: filamentous ascomycetes; approach; probe set; probe ... See more keywords
High phylogenetic utility of an ultraconserved element probe set designed for Arachnida
Sign Up to like & getrecommendations! Published in 2017 at "Molecular Ecology Resources"
DOI: 10.1111/1755-0998.12621
Abstract: Arachnida is an ancient, diverse and ecologically important animal group that contains a number of species of interest for medical, agricultural and engineering applications. Despite their importance, many aspects of the arachnid tree of life… read more here.
Keywords: high phylogenetic; arachnids; utility; arachnid tree ... See more keywords
Target-capture probes for phylogenomics of the Caenogastropoda.
Sign Up to like & getrecommendations! Published in 2023 at "Molecular ecology resources"
DOI: 10.1111/1755-0998.13793
Abstract: Target-capture approaches have facilitated a rapid growth in the field of phylogenomics but few probe sets exist for mollusks, an exceptionally rich phylum with unparalleled ecological and morphological diversity. We designed and tested the first… read more here.
Keywords: probe set; loci; target capture; probe ... See more keywords
A New Approach Using Targeted Sequence Capture for Phylogenomic Studies across Cactaceae
Sign Up to like & getrecommendations! Published in 2022 at "Genes"
DOI: 10.3390/genes13020350
Abstract: Relationships within the major clades of Cactaceae are relatively well known based on DNA sequence data mostly from the chloroplast genome. Nevertheless, some nodes along the backbone of the phylogeny, and especially generic and species-level… read more here.
Keywords: across cactaceae; cactaceae; new approach; sequence ... See more keywords