Chemotaxis detection towards chlorophenols using video processing analysis.
Sign Up to like & getrecommendations! Published in 2017 at "Journal of microbiological methods"
DOI: 10.1016/j.mimet.2017.08.015
Abstract: To our knowledge, this communication is the first report of chemotaxis towards chlorophenols by any bacteria. We used a recently published method based on the agarose in-plug assay combined with video processing analysis and we… read more here.
Keywords: processing analysis; towards chlorophenols; video processing;
MCQR: Enhancing the Processing and Analysis of Quantitative Proteomics Data by Incorporating Chromatography and Mass Spectrometry Information.
Sign Up to like & getrecommendations! Published in 2025 at "Journal of proteome research"
DOI: 10.1021/acs.jproteome.4c01119
Abstract: In the field of proteomics, generating biologically relevant results from mass spectrometry (MS) signals remains a challenging task. This is partly due to the fact that the computational strategies for converting MS signals into biologically… read more here.
Keywords: mass spectrometry; quantitative proteomics; analysis; analysis quantitative ... See more keywords
Processing and analysis methods for transonic cavity flow
Sign Up to like & getrecommendations! Published in 2017 at "Physics of Fluids"
DOI: 10.1063/1.4995461
Abstract: This paper focuses on the localisation of noise sources in transonic cavity flows. Beamforming is used to estimate the pressure fluctuations inside a resonant transonic cavity, showing the localisation of the main sources of noise… read more here.
Keywords: transonic cavity; processing analysis; methods transonic; cavity ... See more keywords
SmMIP-tools: a computational toolset for processing and analysis of single-molecule molecular inversion probes derived data.
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac081
Abstract: MOTIVATION Single-molecule molecular inversion probes (SmMIPs) provide an exceptionally cost-effective and modular approach for routine or large-cohort next-generation sequencing. However, processing the derived raw data to generate highly accurate variants calls remains challenging. RESULTS We… read more here.
Keywords: single molecule; processing analysis; molecule molecular; smmip tools ... See more keywords
MetaboLink: a web application for streamlined processing and analysis of large-scale untargeted metabolomics data
Sign Up to like & getrecommendations! Published in 2024 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btae459
Abstract: Abstract Motivation The post-processing and analysis of large-scale untargeted metabolomics data face significant challenges due to the intricate nature of correction, filtration, imputation, and normalization steps. Manual execution across various applications often leads to inefficiencies,… read more here.
Keywords: analysis; large scale; untargeted metabolomics; scale untargeted ... See more keywords
d2Dplot: 2D X-ray diffraction data processing and analysis for through-the-substrate microdiffraction
Sign Up to like & getrecommendations! Published in 2019 at "Journal of Applied Crystallography"
DOI: 10.1107/s160057671900219x
Abstract: The d2Dplot computer program provides a set of tools for the visualization, processing and analysis of 2D X-ray diffraction (2DXRD) data. Among the operations available there are the sum/subtraction of 2DXRD images, conversion to 1D… read more here.
Keywords: ray diffraction; d2dplot; substrate microdiffraction; processing analysis ... See more keywords
Scipion-ED: a graphical user interface for batch processing and analysis of 3D ED/MicroED data
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Applied Crystallography"
DOI: 10.1107/s1600576722002758
Abstract: The design and usage of Scipion-ED, a graphical user interface program for processing and analysis of three-dimensional electron diffraction (3D ED)/microcrystal electron diffraction (MicroED) data, are presented. A study of the influence of data merging… read more here.
Keywords: scipion graphical; graphical user; processing analysis; user interface ... See more keywords
Connecto-informatics at the mesoscale: current advances in image processing and analysis for mapping the brain connectivity
Sign Up to like & getrecommendations! Published in 2024 at "Brain Informatics"
DOI: 10.1186/s40708-024-00228-9
Abstract: Mapping neural connections within the brain has been a fundamental goal in neuroscience to understand better its functions and changes that follow aging and diseases. Developments in imaging technology, such as microscopy and labeling tools,… read more here.
Keywords: image processing; brain; connectivity; processing analysis ... See more keywords
TAPAS: Towards Automated Processing and Analysis of multi-dimensional bioimage data.
Sign Up to like & getrecommendations! Published in 2020 at "F1000Research"
DOI: 10.12688/f1000research.26977.1
Abstract: Modern microscopy is based on reproducible quantitative analysis, image data should be batch-processed by a standardized system that can be shared and easily reused by others. Furthermore such system should require none or minimal programming… read more here.
Keywords: automated processing; analysis; processing analysis; tapas towards ... See more keywords
TAPAS: Towards Automated Processing and Analysis of multi-dimensional bioimage data
Sign Up to like & getrecommendations! Published in 2020 at "F1000Research"
DOI: 10.12688/f1000research.26977.2
Abstract: Modern microscopy is based on reproducible quantitative analysis, image data should be batch-processed by a standardized system that can be shared and easily reused by others. Furthermore, such system should require none or minimal programming… read more here.
Keywords: automated processing; analysis; processing analysis; tapas towards ... See more keywords
PUPAID: A R + ImageJ pipeline for thorough and semi-automated processing and analysis of multi-channel immunofluorescence data
Sign Up to like & getrecommendations! Published in 2024 at "PLOS ONE"
DOI: 10.1371/journal.pone.0308970
Abstract: PUPAID is a workflow written in R + ImageJ languages which is dedicated to the semi-automated processing and analysis of multi-channel immunofluorescence data. The workflow is designed to extract fluorescence signals within automatically-segmented cells, defined… read more here.
Keywords: automated processing; multi; analysis; analysis multi ... See more keywords