Towards an optimised processing pipeline for diffusion magnetic resonance imaging data: Effects of artefact corrections on diffusion metrics and their age associations in UK Biobank
Sign Up to like & getrecommendations! Published in 2019 at "Human Brain Mapping"
DOI: 10.1002/hbm.24691
Abstract: Increasing interest in the structural and functional organisation of the human brain encourages the acquisition of big data sets comprising multiple neuroimaging modalities, often accompanied by additional information obtained from health records, cognitive tests, biomarkers… read more here.
Keywords: resonance imaging; diffusion; pipeline; processing pipeline ... See more keywords
A Natural Language Processing Pipeline for Detecting Informal Data References in Academic Literature
Sign Up to like & getrecommendations! Published in 2022 at "Proceedings of the Association for Information Science and Technology"
DOI: 10.1002/pra2.614
Abstract: Discovering authoritative links between publications and the datasets that they use can be a labor‐intensive process. We introduce a natural language processing pipeline that retrieves and reviews publications for informal references to research datasets, which… read more here.
Keywords: data references; processing pipeline; informal data; pipeline ... See more keywords
Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project
Sign Up to like & getrecommendations! Published in 2019 at "Neuroimage"
DOI: 10.1016/j.neuroimage.2018.05.064
Abstract: &NA; The developing Human Connectome Project is set to create and make available to the scientific community a 4‐dimensional map of functional and structural cerebral connectivity from 20 to 44 weeks post‐menstrual age, to allow… read more here.
Keywords: developing human; project; pipeline; processing pipeline ... See more keywords
Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE
Sign Up to like & getrecommendations! Published in 2021 at "Nature Communications"
DOI: 10.1038/s41467-021-21808-x
Abstract: Transposable elements (TEs) make up a majority of a typical eukaryote’s genome, and contribute to cell heterogeneity in unclear ways. Single-cell sequencing technologies are powerful tools to explore cells, however analysis is typically gene-centric and… read more here.
Keywords: single cell; processing pipeline; heterogeneity; expression ... See more keywords
A data processing pipeline for the AACR project GENIE biopharma collaborative data with the {genieBPC} R package
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac796
Abstract: Abstract Motivation Data from the American Association for Cancer Research Project Genomics Evidence Neoplasia Information Exchange Biopharma Collaborative (GENIE BPC) represent comprehensive clinical data linked to high-throughput sequencing data, providing a multi-institution, pan-cancer, publicly available… read more here.
Keywords: data processing; project; geniebpc package; processing pipeline ... See more keywords
Fast Post-Processing Pipeline for Optical Projection Tomography
Sign Up to like & getrecommendations! Published in 2017 at "IEEE Transactions on NanoBioscience"
DOI: 10.1109/tnb.2017.2706967
Abstract: To improve the effectiveness and efficiency of optical projection tomography (OPT) 3-D reconstruction, we present a fast post-processing pipeline, including cropping, background subtraction, center of rotation (COR) correction, and 3-D reconstruction. Regarding to the COR… read more here.
Keywords: processing pipeline; post processing; cor;
Data processing pipeline for cardiogenic shock prediction using machine learning
Sign Up to like & getrecommendations! Published in 2023 at "Frontiers in Cardiovascular Medicine"
DOI: 10.3389/fcvm.2023.1132680
Abstract: Introduction Recent advances in machine learning provide new possibilities to process and analyse observational patient data to predict patient outcomes. In this paper, we introduce a data processing pipeline for cardiogenic shock (CS) prediction from… read more here.
Keywords: pipeline; shock prediction; processing pipeline; cardiogenic shock ... See more keywords
Synthetic Arterial Spin Labeling MRI of the Kidneys for Evaluation of Data Processing Pipeline
Sign Up to like & getrecommendations! Published in 2022 at "Diagnostics"
DOI: 10.3390/diagnostics12081854
Abstract: Accurate quantification of perfusion is crucial for diagnosis and monitoring of kidney function. Arterial spin labeling (ASL), a completely non-invasive magnetic resonance imaging technique, is a promising method for this application. However, differences in acquisition… read more here.
Keywords: evaluation; spin labeling; perfusion; processing pipeline ... See more keywords