KMCP: accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac845
Abstract: Motivation The growing number of microbial reference genomes enables the improvement of metagenomic profiling accuracy but also imposes greater requirements on the indexing efficiency, database size, and runtime of taxonomic profilers. Additionally, most profilers focus… read more here.
Keywords: metagenomic profiling; kmcp; viral populations; profiling ... See more keywords
ProPan: a comprehensive database for profiling prokaryotic pan-genome dynamics
Sign Up to like & getrecommendations! Published in 2022 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkac832
Abstract: Abstract Compared with conventional comparative genomics, the recent studies in pan-genomics have provided further insights into species genomic dynamics, taxonomy and identification, pathogenicity and environmental adaptation. To better understand genome characteristics of species of interest… read more here.
Keywords: genome dynamics; pan genome; database; prokaryotic pan ... See more keywords