Spatial variability of prokaryotic and viral abundances in the Kermadec and Atacama Trench regions
Sign Up to like & getrecommendations! Published in 2021 at "Limnology and Oceanography"
DOI: 10.1002/lno.11711
Abstract: Abstract Hadal trenches represent the deepest part of the ocean and are dynamic depocenters with intensified prokaryotic activity. Here, we explored the distribution and drivers of prokaryotic and viral abundance from the ocean surface and… read more here.
Keywords: depth; trench regions; prokaryotic viral; spatial variability ... See more keywords
Honey-bee–associated prokaryotic viral communities reveal wide viral diversity and a profound metabolic coding potential
Sign Up to like & getrecommendations! Published in 2020 at "Proceedings of the National Academy of Sciences of the United States of America"
DOI: 10.1073/pnas.1921859117
Abstract: Significance This study uses viral-like particle purification and subsequent unbiased genome sequencing to identify prokaryotic viruses associated with Apis mellifera. Interestingly, bacteriophages found in honey bees show a high diversity and span different viral taxa.… read more here.
Keywords: viral communities; diversity; prokaryotic viral; honey ... See more keywords
KMCP: accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac845
Abstract: Motivation The growing number of microbial reference genomes enables the improvement of metagenomic profiling accuracy but also imposes greater requirements on the indexing efficiency, database size, and runtime of taxonomic profilers. Additionally, most profilers focus… read more here.
Keywords: metagenomic profiling; kmcp; viral populations; profiling ... See more keywords