The pearl necklace model in protein A chromatography: Molecular mechanisms at the resin interface
Sign Up to like & getrecommendations! Published in 2019 at "Biotechnology and Bioengineering"
DOI: 10.1002/bit.26843
Abstract: Staphylococcal protein A chromatography is an established core technology for monoclonal antibody purification and capture in the downstream processing. MabSelect SuRe involves a tetrameric chain of a recombinant form of the B domain of staphylococcal… read more here.
Keywords: protein; staphylococcal protein; antibody; protein chromatography ... See more keywords
Group depositions to the Protein Data Bank need adequate presentation and different archiving protocol
Sign Up to like & getrecommendations! Published in 2022 at "Protein Science"
DOI: 10.1002/pro.4271
Abstract: Faculty of Chemistry, A. Mickiewicz University, Poznan, Poland Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland Center for Structural Biology, National Cancer Institute, Frederick, Maryland, USA Department of Molecular Physiology and Biological Physics,… read more here.
Keywords: depositions protein; chemistry; data bank; group depositions ... See more keywords
The Protein Data Bank Archive.
Sign Up to like & getrecommendations! Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1406-8_1
Abstract: Protein Data Bank is the single worldwide archive of experimentally determined macromolecular structure data. Established in 1971 as the first open access data resource in biology, the PDB archive is managed by the worldwide Protein… read more here.
Keywords: data bank; bank archive; biology; protein data ... See more keywords
Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.
Sign Up to like & getrecommendations! Published in 2017 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-7000-1_26
Abstract: The Protein Data Bank (PDB)--the single global repository of experimentally determined 3D structures of biological macromolecules and their complexes--was established in 1971, becoming the first open-access digital resource in the biological sciences. The PDB archive… read more here.
Keywords: data bank; bank pdb; protein data;
Underestimated Halogen Bonds Forming with Protein Backbone in Protein Data Bank.
Sign Up to like & getrecommendations! Published in 2017 at "Journal of chemical information and modeling"
DOI: 10.1021/acs.jcim.7b00235
Abstract: Halogen bonds (XBs) are attracting increasing attention in biological systems. Protein Data Bank (PDB) archives experimentally determined XBs in biological macromolecules. However, no software for structure refinement in X-ray crystallography takes into account XBs, which… read more here.
Keywords: forming protein; backbone; protein data; xbs ... See more keywords
Leveraging the Entirety of the Protein Data Bank to Enable Improved Structure Prediction Based on Cross-Link Data.
Sign Up to like & getrecommendations! Published in 2020 at "Journal of proteome research"
DOI: 10.1021/acs.jproteome.0c00495
Abstract: XLinkDB is a fast-expanding public database now storing more than 100 000 distinct identified cross-linked protein residue pairs acquired by chemical cross-linking with mass spectrometry from samples of 12 species (J. Proteome Res. 2019, 18 (2),… read more here.
Keywords: data bank; cross; cross link; protein data ... See more keywords
Random sampling of the Protein Data Bank: RaSPDB
Sign Up to like & getrecommendations! Published in 2021 at "Scientific Reports"
DOI: 10.1038/s41598-021-03615-y
Abstract: A novel and simple procedure (RaSPDB) for Protein Data Bank mining is described. 10 PDB subsets, each containing 7000 randomly selected protein chains, are built and used to make 10 estimations of the average value… read more here.
Keywords: random sampling; data bank; protein; raspdb ... See more keywords
Mining anion–aromatic interactions in the Protein Data Bank
Sign Up to like & getrecommendations! Published in 2022 at "Chemical Science"
DOI: 10.1039/d2sc00763k
Abstract: Mutual positioning and non-covalent interactions in anion–aromatic motifs are crucial for functional performance of biological systems. In this context, regular, comprehensive Protein Data Bank (PDB) screening that involves various scientific points of view and individual… read more here.
Keywords: data bank; analysis; anion; anion aromatic ... See more keywords
RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac317
Abstract: Abstract Motivation Mapping positional features from one-dimensional (1D) sequences onto three-dimensional (3D) structures of biological macromolecules is a powerful tool to show geometric patterns of biochemical annotations and provide a better understanding of the mechanisms… read more here.
Keywords: rcsb protein; macromolecular assemblies; data bank; positional features ... See more keywords
Finding enzyme cofactors in Protein Data Bank
Sign Up to like & getrecommendations! Published in 2019 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btz115
Abstract: Abstract Motivation Cofactors are essential for many enzyme reactions. The Protein Data Bank (PDB) contains >67 000 entries containing enzyme structures, many with bound cofactor or cofactor-like molecules. This work aims to identify and categorize these… read more here.
Keywords: data bank; finding enzyme; pdbe org; protein data ... See more keywords
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
Sign Up to like & getrecommendations! Published in 2019 at "Nucleic Acids Research"
DOI: 10.1093/nar/gky1004
Abstract: Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, rcsb.org), the US data center for the global PDB archive, serves thousands of Data Depositors in the Americas and Oceania and makes 3D… read more here.
Keywords: data bank; research; pdb; rcsb ... See more keywords