VIQoR: a web service for visually supervised protein inference and protein quantification.
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac182
Abstract: MOTIVATION In quantitative bottom-up mass spectrometry (MS)-based proteomics, the reliable estimation of protein concentration changes from peptide quantifications between different biological samples is essential. This estimation is not a single task but comprises the two… read more here.
Keywords: viqor; summarization; inference protein; protein inference ... See more keywords
MetaLP: An integrative linear programming method for protein inference in metaproteomics
Sign Up to like & getrecommendations! Published in 2022 at "PLOS Computational Biology"
DOI: 10.1371/journal.pcbi.1010603
Abstract: Metaproteomics based on high-throughput tandem mass spectrometry (MS/MS) plays a crucial role in characterizing microbiome functions. The acquired MS/MS data is searched against a protein sequence database to identify peptides, which are then used to… read more here.
Keywords: integrative linear; inference metaproteomics; linear programming; protein inference ... See more keywords
ProInfer: An interpretable protein inference tool leveraging on biological networks
Sign Up to like & getrecommendations! Published in 2023 at "PLOS Computational Biology"
DOI: 10.1371/journal.pcbi.1010961
Abstract: In mass spectrometry (MS)-based proteomics, protein inference from identified peptides (protein fragments) is a critical step. We present ProInfer (Protein Inference), a novel protein assembly method that takes advantage of information in biological networks. ProInfer… read more here.
Keywords: proinfer interpretable; networks proinfer; biological networks; protein inference ... See more keywords