Sequence representation approaches for sequence-based protein prediction tasks that use deep learning.
Sign Up to like & getrecommendations! Published in 2021 at "Briefings in functional genomics"
DOI: 10.1093/bfgp/elaa030
Abstract: Deep learning has been increasingly used in bioinformatics, especially in sequence-based protein prediction tasks, as large amounts of biological data are available and deep learning techniques have been developed rapidly in recent years. For sequence-based… read more here.
Keywords: protein; based protein; sequence based; deep learning ... See more keywords
Evaluating network-based missing protein prediction using p-values, Bayes Factors, and probabilities
Sign Up to like & getrecommendations! Published in 2023 at "Journal of bioinformatics and computational biology"
DOI: 10.1142/s0219720023500051
Abstract: Some prediction methods use probability to rank their predictions, while some other prediction methods do not rank their predictions and instead use [Formula: see text]-values to support their predictions. This disparity renders direct cross-comparison of… read more here.
Keywords: evaluating network; prediction methods; prediction; missing protein ... See more keywords
Protein prediction for trait mapping in diverse populations
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DOI: 10.1371/journal.pone.0264341
Abstract: Genetically regulated gene expression has helped elucidate the biological mechanisms underlying complex traits. Improved high-throughput technology allows similar interrogation of the genetically regulated proteome for understanding complex trait mechanisms. Here, we used the Trans-omics for… read more here.
Keywords: study; trait; prediction; protein prediction ... See more keywords
A disease-related essential protein prediction model based on the transfer neural network
Sign Up to like & getrecommendations! Published in 2023 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2022.1087294
Abstract: Essential proteins play important roles in the development and survival of organisms whose mutations are proven to be the drivers of common internal diseases having higher prevalence rates. Due to high costs of traditional biological… read more here.
Keywords: neural network; transfer neural; protein prediction;