Comparing intestinal versus diffuse gastric cancer using a PEFF-oriented proteomic pipeline.
Sign Up to like & getrecommendations! Published in 2018 at "Journal of proteomics"
DOI: 10.1016/j.jprot.2017.10.005
Abstract: Gastric cancer is the fifth most common malignant neoplasia and the third leading cause of cancer death worldwide. Mac-Cormick et al. recently showed the importance of considering the anatomical region of the tumor in proteomic… read more here.
Keywords: diffuse; gastric cancer; proteomic pipeline; versus ... See more keywords
StPeter: Seamless Label-Free Quantification with the Trans-Proteomic Pipeline.
Sign Up to like & getrecommendations! Published in 2018 at "Journal of proteome research"
DOI: 10.1021/acs.jproteome.7b00786
Abstract: Label-free quantification has grown in popularity as a means of obtaining relative abundance measures for proteomics experiments. However, easily accessible and integrated tools to perform label-free quantification have been lacking. We describe StPeter, an implementation… read more here.
Keywords: trans proteomic; proteomic pipeline; free quantification; label free ... See more keywords
PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline.
Sign Up to like & getrecommendations! Published in 2019 at "Journal of proteome research"
DOI: 10.1021/acs.jproteome.9b00205
Abstract: Spectral matching sequence database search engines commonly used on mass spectrometry-based proteomics experiments excel at identifying peptide sequence ions, and in addition, possible sequence ions carrying post-translational modifications (PTMs), but most do not provide confidence… read more here.
Keywords: trans proteomic; mass; proteomic pipeline; mass modification ... See more keywords