Pseudotime Reconstruction Using TSCAN.
Sign Up to like & getrecommendations! Published in 2019 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-9057-3_8
Abstract: In many single-cell RNA-seq (scRNA-seq) experiments, cells represent progressively changing states along a continuous biological process. A useful approach to analyzing data from such experiments is to computationally order cells based on their gradual transition… read more here.
Keywords: reconstruction; seq; pseudotime; reconstruction using ... See more keywords
scHiCPTR: unsupervised pseudotime inference through dual graph refinement for single-cell Hi-C data
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac670
Abstract: MOTIVATION The emerging single-cell Hi-C technology provides opportunities to study dynamics of chromosomal organization. How to construct a pseudotime path using single-cell Hi-C contact matrices to order cells along developmental trajectory is a challenging topic,… read more here.
Keywords: cell; pseudotime; schicptr unsupervised; graph refinement ... See more keywords
Investigating the Clinico-Molecular and Immunological Evolution of Lung Adenocarcinoma Using Pseudotime Analysis
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Oncology"
DOI: 10.3389/fonc.2022.828505
Abstract: Introduction As the molecular features of lung adenocarcinoma (LUAD) have been evaluated as a cross-sectional study, the course of tumor characteristics has not been modeled. The temporal evolution of the tumor immune microenvironment (TIME), as… read more here.
Keywords: cell; pseudotime; lung adenocarcinoma; clinico molecular ... See more keywords