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   Articles with "python library" as a keyword



PhotoHolmes: a Python library for forgery detection in digital images

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recommendations! Published in 2024 at "Multimedia Tools and Applications"

DOI: 10.1007/s11042-025-20626-3

Abstract: In this paper, we introduce PhotoHolmes, an open-source Python library designed to easily run and benchmark forgery detection methods on digital images. The library includes implementations of popular and state-of-the-art methods, dataset integration tools, and… read more here.

Keywords: photoholmes python; forgery detection; python library; forgery ... See more keywords
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AESOP: A Python Library for Investigating Electrostatics in Protein Interactions.

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recommendations! Published in 2017 at "Biophysical journal"

DOI: 10.1016/j.bpj.2017.04.005

Abstract: Electric fields often play a role in guiding the association of protein complexes. Such interactions can be further engineered to accelerate complex association, resulting in protein systems with increased productivity. This is especially true for… read more here.

Keywords: library investigating; python library; electrostatics; electrostatics protein ... See more keywords

Hard Potato: A Python Library to Control Commercial Potentiostats and to Automate Electrochemical Experiments

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recommendations! Published in 2023 at "Analytical Chemistry"

DOI: 10.1021/acs.analchem.2c04862

Abstract: Here, we develop and show the use of an open-source Python library to control commercial potentiostats. It standardizes the commands for different potentiostat models, opening the possibility to perform automated experiments independently of the instrument… read more here.

Keywords: python library; library control; control commercial; commercial potentiostats ... See more keywords

A python library for the fast and scalable computation of biologically meaningful individual specific networks

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recommendations! Published in 2024 at "Scientific Reports"

DOI: 10.1038/s41598-024-69067-2

Abstract: Individual Specific Networks (ISNs) are a tool used in computational biology to infer Individual Specific relationships between biological entities from omics data. ISNs provide insights into how the interactions among these entities affect their respective… read more here.

Keywords: individual specific; tractor; library fast; specific networks ... See more keywords

readPTU: a python library to analyse time tagged time resolved data

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recommendations! Published in 2019 at "Journal of Instrumentation"

DOI: 10.1088/1748-0221/14/06/t06011

Abstract: readPTU is a python package designed to analyze time-correlated single-photon counting data. The use of the library promotes the storage of the complete time arrival information of the photons and full flexibility in post-processing data… read more here.

Keywords: time resolved; time; library analyse; readptu python ... See more keywords

AEON.py: Python library for attractor analysis in asynchronous Boolean networks

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recommendations! Published in 2022 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btac624

Abstract: SUMMARY AEON.py is a Python library for the analysis of the long-term behaviour in very large asynchronous Boolean networks. It provides significant computational improvements over the state of the art methods for attractor detection. Furthermore,… read more here.

Keywords: python library; aeon python; attractor; boolean networks ... See more keywords

Rnalib: a Python library for custom transcriptomics analyses

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recommendations! Published in 2024 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btae751

Abstract: Abstract Motivation The efficient and reproducible analysis of high-throughput sequencing datasets necessitates the development of methodical and robust computational pipelines that integrate established and bespoke bioinformatics analysis tools, often written in high-level programming languages such… read more here.

Keywords: python library; analysis; rnalib python; library custom ... See more keywords
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crystchemlib: a Python library and GUI for analysis of crystal structure datasets

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recommendations! Published in 2025 at "Journal of Applied Crystallography"

DOI: 10.1107/s1600576724011956

Abstract: The problem of extracting basic (e.g. bond lengths and angles) and advanced (e.g. polyhedron volumes and effective coordination numbers) crystal chemical parameters from large datasets of CIFs in a quick and flexible way is addressed… read more here.

Keywords: crystchemlib python; gui; python library; gui analysis ... See more keywords

PyQUBO: Python Library for Mapping Combinatorial Optimization Problems to QUBO Form

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recommendations! Published in 2022 at "IEEE Transactions on Computers"

DOI: 10.1109/tc.2021.3063618

Abstract: We present PyQUBO, an open-source Python library for constructing quadratic unconstrained binary optimizations (QUBOs) from the objective functions and the constraints of optimization problems. PyQUBO enables users to prepare QUBOs or Ising models for various… read more here.

Keywords: pyqubo python; combinatorial optimization; optimization problems; quantum annealing ... See more keywords

medigan: a Python library of pretrained generative models for medical image synthesis.

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recommendations! Published in 2022 at "Journal of medical imaging"

DOI: 10.1117/1.jmi.10.6.061403

Abstract: Purpose Deep learning has shown great promise as the backbone of clinical decision support systems. Synthetic data generated by generative models can enhance the performance and capabilities of data-hungry deep learning models. However, there is… read more here.

Keywords: python library; pretrained generative; generative models; generative model ... See more keywords

3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.

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recommendations! Published in 2019 at "F1000Research"

DOI: 10.12688/f1000research.18458.2

Abstract: We present forgi, a Python library to analyze the tertiary structure of RNA secondary structure elements. Our representation of an RNA molecule is centered on secondary structure elements (stems, bulges and loops). By fitting a… read more here.

Keywords: structure elements; python library; rna; secondary structure ... See more keywords