AESOP: A Python Library for Investigating Electrostatics in Protein Interactions.
Sign Up to like & getrecommendations! Published in 2017 at "Biophysical journal"
DOI: 10.1016/j.bpj.2017.04.005
Abstract: Electric fields often play a role in guiding the association of protein complexes. Such interactions can be further engineered to accelerate complex association, resulting in protein systems with increased productivity. This is especially true for… read more here.
Keywords: library investigating; python library; electrostatics; electrostatics protein ... See more keywords
Hard Potato: A Python Library to Control Commercial Potentiostats and to Automate Electrochemical Experiments
Sign Up to like & getrecommendations! Published in 2023 at "Analytical Chemistry"
DOI: 10.1021/acs.analchem.2c04862
Abstract: Here, we develop and show the use of an open-source Python library to control commercial potentiostats. It standardizes the commands for different potentiostat models, opening the possibility to perform automated experiments independently of the instrument… read more here.
Keywords: python library; library control; control commercial; commercial potentiostats ... See more keywords
readPTU: a python library to analyse time tagged time resolved data
Sign Up to like & getrecommendations! Published in 2019 at "Journal of Instrumentation"
DOI: 10.1088/1748-0221/14/06/t06011
Abstract: readPTU is a python package designed to analyze time-correlated single-photon counting data. The use of the library promotes the storage of the complete time arrival information of the photons and full flexibility in post-processing data… read more here.
Keywords: time resolved; time; library analyse; readptu python ... See more keywords
AEON.py: Python library for attractor analysis in asynchronous Boolean networks
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac624
Abstract: SUMMARY AEON.py is a Python library for the analysis of the long-term behaviour in very large asynchronous Boolean networks. It provides significant computational improvements over the state of the art methods for attractor detection. Furthermore,… read more here.
Keywords: python library; aeon python; attractor; boolean networks ... See more keywords
PyQUBO: Python Library for Mapping Combinatorial Optimization Problems to QUBO Form
Sign Up to like & getrecommendations! Published in 2022 at "IEEE Transactions on Computers"
DOI: 10.1109/tc.2021.3063618
Abstract: We present PyQUBO, an open-source Python library for constructing quadratic unconstrained binary optimizations (QUBOs) from the objective functions and the constraints of optimization problems. PyQUBO enables users to prepare QUBOs or Ising models for various… read more here.
Keywords: pyqubo python; combinatorial optimization; optimization problems; quantum annealing ... See more keywords
medigan: a Python library of pretrained generative models for medical image synthesis.
Sign Up to like & getrecommendations! Published in 2022 at "Journal of medical imaging"
DOI: 10.1117/1.jmi.10.6.061403
Abstract: Purpose Deep learning has shown great promise as the backbone of clinical decision support systems. Synthetic data generated by generative models can enhance the performance and capabilities of data-hungry deep learning models. However, there is… read more here.
Keywords: python library; pretrained generative; generative models; generative model ... See more keywords
3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.
Sign Up to like & getrecommendations! Published in 2019 at "F1000Research"
DOI: 10.12688/f1000research.18458.2
Abstract: We present forgi, a Python library to analyze the tertiary structure of RNA secondary structure elements. Our representation of an RNA molecule is centered on secondary structure elements (stems, bulges and loops). By fitting a… read more here.
Keywords: structure elements; python library; rna; secondary structure ... See more keywords