LAUSR

About LAUSR
Donate
Contact Us

Follow us:

You are not signed in:

Sign Up!


   Articles with "python package" as a keyword



Photo by pichler_sebastian from unsplash

CameraTransform: A Python package for perspective corrections and image mapping

Sign Up to like & get
recommendations! Published in 2019 at "SoftwareX"

DOI: 10.1016/j.softx.2019.100333

Abstract: Camera images and video recordings are simple and non-invasive tools to investigate animals in their natural habitat. Quantitative evaluations, however, often require an exact reconstruction of object positions, sizes, and distances in the image. Here,… read more here.

Keywords: camera; python package; image; cameratransform python ... See more keywords
Photo by lauravinck from unsplash

irradpy: Python package for MERRA-2 download, extraction and usage for clear-sky irradiance modelling

Sign Up to like & get
recommendations! Published in 2020 at "Solar Energy"

DOI: 10.1016/j.solener.2020.02.061

Abstract: Abstract Clear-sky irradiance modelling requires many input variables to access the best available methodologies in literature. It is the authors’ experience that there are unnecessary computational barriers to obtaining and using the data needed for… read more here.

Keywords: irradiance; irradiance modelling; clear sky; sky irradiance ... See more keywords
Photo from wikipedia

PySmash: Python package and individual executable program for representative substructure generation and application

Sign Up to like & get
recommendations! Published in 2021 at "Briefings in bioinformatics"

DOI: 10.1093/bib/bbab017

Abstract: BACKGROUND Substructure screening is widely applied to evaluate the molecular potency and ADMET properties of compounds in drug discovery pipelines, and it can also be used to interpret QSAR models for the design of new… read more here.

Keywords: generation; representative substructures; python package; executable program ... See more keywords
Photo by jmuniz from unsplash

CRNT4SBML: a Python package for the detection of bistability in biochemical reaction networks

Sign Up to like & get
recommendations! Published in 2020 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btaa241

Abstract: MOTIVATION Signaling pathways capable of switching between two states are ubiquitous within living organisms. They provide the cells with the means to produce reversible or irreversible decisions. Switch-like behavior of biological systems is realized through… read more here.

Keywords: biochemical reaction; reaction networks; python package; reaction ... See more keywords
Photo by soheil_rb from unsplash

localpdb—a Python package to manage protein structures and their annotations

Sign Up to like & get
recommendations! Published in 2022 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btac121

Abstract: Abstract Motivation The wealth of protein structures collected in the Protein Data Bank enabled large-scale studies of their function and evolution. Such studies, however, require the generation of customized datasets combining the structural data with… read more here.

Keywords: localpdb python; protein structures; package manage; python package ... See more keywords
Photo by kommumikation from unsplash

PHi-C2: interpreting Hi-C data as the dynamic 3D genome state

Sign Up to like & get
recommendations! Published in 2022 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btac613

Abstract: Hi-C is a widely used assay for studying three-dimensional (3D) genome organization across the whole genome. Here, we present PHi-C2, a Python package supported by mathematical and biophysical polymer modeling, that converts an input Hi-C… read more here.

Keywords: python package; genome state; phi; phi interpreting ... See more keywords
Photo by kommumikation from unsplash

SBMLDiagrams: a python package to process and visualize SBML layout and render

Sign Up to like & get
recommendations! Published in 2022 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btac730

Abstract: Abstract Summary The systems biology markup language (SBML) is an extensible standard format for exchanging biochemical models. One of the extensions for SBML is the SBML Layout and Render package. This allows modelers to describe… read more here.

Keywords: sbml; python package; sbml layout; layout render ... See more keywords
Photo by kommumikation from unsplash

PyGenePlexus: a Python package for gene discovery using network-based machine learning

Sign Up to like & get
recommendations! Published in 2022 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btad064

Abstract: PyGenePlexus is a Python package that enables a user to gain insight into any gene set of interest based on a molecular interaction network using supervised machine learning. PyGenePlexus provides predictions of how associated every… read more here.

Keywords: network; python package; pygeneplexus python; machine learning ... See more keywords
Photo from wikipedia

The DynaSig-ML Python package: automated learning of biomolecular dynamics–function relationships

Sign Up to like & get
recommendations! Published in 2022 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btad180

Abstract: Summary The DynaSig-ML (“Dynamical Signatures - Machine Learning”) Python package allows the efficient, user-friendly exploration of 3D dynamics-function relationships in biomolecules, using datasets of experimental measures from large numbers of sequence variants. The DynaSig-ML package… read more here.

Keywords: dynamics function; package automated; python package; function relationships ... See more keywords
Photo by bermixstudio from unsplash

Knot_pull - python package for biopolymer smoothing and knot detection

Sign Up to like & get
recommendations! Published in 2020 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btz644

Abstract: SUMMARY The biggest hurdle in studying topology in biopolymers is the steep learning curve for actually seeing the knots in structure visualization. Knot_pull is a command line utility designed to simplify this process-it presents the… read more here.

Keywords: knot; python package; knot pull; package biopolymer ... See more keywords
Photo by campaign_creators from unsplash

scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data

Sign Up to like & get
recommendations! Published in 2022 at "Bioinformatics"

DOI: 10.1101/2022.07.09.498657

Abstract: scFates provides an extensive toolset for analysis of dynamic trajectories comprising tree learning, feature association testing, branch differential expression and with a focus on cell biasing and fate splits at the level of bifurcations. It… read more here.

Keywords: cell; python package; cell data; analysis ... See more keywords