Challenges and perspectives of quantitative microbiome profiling in food fermentations.
Sign Up to like & getrecommendations! Published in 2022 at "Critical reviews in food science and nutrition"
DOI: 10.1080/10408398.2022.2147899
Abstract: Spontaneously fermented foods are consumed and appreciated for thousands of years although they are usually produced with fluctuated productivity and quality, potentially threatening both food safety and food security. To guarantee consistent fermentation productivity and… read more here.
Keywords: microbiota; microbiome profiling; food; quantitative microbiome ... See more keywords
How to Count Our Microbes? The Effect of Different Quantitative Microbiome Profiling Approaches
Sign Up to like & getrecommendations! Published in 2020 at "Frontiers in Cellular and Infection Microbiology"
DOI: 10.3389/fcimb.2020.00403
Abstract: Next-generation sequencing (NGS) has instigated the research on the role of the microbiome in health and disease. The compositional nature of such microbiome datasets makes it however challenging to identify those microbial taxa that are… read more here.
Keywords: microbiome; flow cytometry; quantification; quantitative microbiome ... See more keywords
Microbial Networks in SPRING - Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
Sign Up to like & getrecommendations! Published in 2019 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2019.00516
Abstract: High-throughput microbial sequencing techniques, such as targeted amplicon-based and metagenomic profiling, provide low-cost genomic survey data of microbial communities in their natural environment, ranging from marine ecosystems to host-associated habitats. While standard microbiome profiling data… read more here.
Keywords: parametric rank; microbiome; correlation; semi parametric ... See more keywords