Quartet-based computations of internode certainty provide robust measures of phylogenetic incongruence.
Sign Up to like & getrecommendations! Published in 2019 at "Systematic biology"
DOI: 10.1093/sysbio/syz058
Abstract: Incongruence, or topological conflict, is prevalent in genome-scale data sets. Internode Certainty (IC) and related measures were recently introduced to explicitly quantify the level of incongruence of a given internal branch among a set of… read more here.
Keywords: based measures; bipartition; quartet based; internode certainty ... See more keywords
Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees
Sign Up to like & getrecommendations! Published in 2022 at "Molecular Biology and Evolution"
DOI: 10.1101/2022.02.19.481132
Abstract: Phylogenomic analyses routinely estimate species trees using methods that account for gene tree discordance. However, the most scalable species tree inference methods, which summarize independently inferred gene trees to obtain a species tree, are sensitive… read more here.
Keywords: gene tree; species trees; summary methods; quartet based ... See more keywords