Assessing next-generation sequencing-based computational methods for predicting transcriptional regulators with query gene sets
Sign Up to like & getrecommendations! Published in 2024 at "Briefings in Bioinformatics"
DOI: 10.1093/bib/bbae366
Abstract: Abstract This article provides an in-depth review of computational methods for predicting transcriptional regulators (TRs) with query gene sets. Identification of TRs is of utmost importance in many biological applications, including but not limited to… read more here.
Keywords: transcriptional regulators; computational methods; methods predicting; query gene ... See more keywords
Co-expressed Pathways DataBase for Tomato: a database to predict pathways relevant to a query gene
Sign Up to like & getrecommendations! Published in 2017 at "BMC Genomics"
DOI: 10.1186/s12864-017-3786-3
Abstract: BackgroundGene co-expression, the similarity of gene expression profiles under various experimental conditions, has been used as an indicator of functional relationships between genes, and many co-expression databases have been developed for predicting gene functions. These… read more here.
Keywords: strongly expressed; query gene; expression; database ... See more keywords