Comparison and benchmark of structural variants detected from long read and long-read assembly.
Sign Up to like & getrecommendations! Published in 2023 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbad188
Abstract: Structural variant (SV) detection is essential for genomic studies, and long-read sequencing technologies have advanced our capacity to detect SVs directly from read or de novo assembly, also known as read-based and assembly-based strategy. However,… read more here.
Keywords: based strategy; assembly based; svs; long read ... See more keywords
HAHap: a read-based haplotyping method using hierarchical assembly
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DOI: 10.7717/peerj.5852
Abstract: Background The need for read-based phasing arises with advances in sequencing technologies. The minimum error correction (MEC) approach is the primary trend to resolve haplotypes by reducing conflicts in a single nucleotide polymorphism-fragment matrix. However,… read more here.
Keywords: read based; assembly hahap; method; assembly ... See more keywords