Generating human papillomavirus (HPV) reference databases to maximize genomic mapping.
Sign Up to like & getrecommendations! Published in 2021 at "Archives of virology"
DOI: 10.1007/s00705-021-05256-y
Abstract: Genomic experiments analyzing human papillomaviruses (HPVs) require a carefully selected list of sequences as a reference database to map millions of reads. The available sources, such as the Papillomavirus Episteme (PaVE), are organized based on… read more here.
Keywords: mapping; generating human; reference; hpv ... See more keywords
T-matrix methods for electromagnetic structured beams: A commented reference database for the period 2014–2018
Sign Up to like & getrecommendations! Published in 2019 at "Journal of Quantitative Spectroscopy and Radiative Transfer"
DOI: 10.1016/j.jqsrt.2019.04.004
Abstract: Abstract T-matrix methods for electromagnetic structured beams mainly encompass Generalized Lorenz-Mie Theories (GLMTs) which form a set of analytical approaches dealing with the interaction between electromagnetic structured beams and a class of particles possessing enough… read more here.
Keywords: reference database; commented reference; methods electromagnetic; electromagnetic structured ... See more keywords
µgreen-db: a reference database for the 23S rRNA gene of eukaryotic plastids and cyanobacteria
Sign Up to like & getrecommendations! Published in 2020 at "Scientific Reports"
DOI: 10.1038/s41598-020-62555-1
Abstract: Studying the ecology of photosynthetic microeukaryotes and prokaryotic cyanobacterial communities requires molecular tools to complement morphological observations. These tools rely on specific genetic markers and require the development of specialised databases to achieve taxonomic assignment.… read more here.
Keywords: rrna gene; reference database; 23s rrna;
A matrix-assisted laser desorption/ionization time of flight mass spectrometry reference database for the identification of Histoplasma capsulatum
Sign Up to like & getrecommendations! Published in 2018 at "Medical Mycology"
DOI: 10.1093/mmy/myx047
Abstract: The isolation of the pathogenic fungus Histoplasma capsulatum from cultures together with the visualization of typical intracellular yeast in tissues are the gold standard methods for diagnosis of histoplasmosis. However, cultures are time-consuming, require level… read more here.
Keywords: time; database; capsulatum; reference database ... See more keywords
Reference Tree and Environmental Sequence Diversity of Labyrinthulomycetes
Sign Up to like & getrecommendations! Published in 2017 at "Journal of Eukaryotic Microbiology"
DOI: 10.1111/jeu.12342
Abstract: Labyrinthulomycetes are heterotrophic stramenopiles that are ubiquitous in a wide range of both marine and freshwater habitats and play important roles in decomposition of organic matter. The diversity and taxonomy of Labyrinthulomycetes has been studied… read more here.
Keywords: reference tree; tree environmental; diversity; reference ... See more keywords
Kinect V2 Performance Assessment in Daily-Life Gestures: Cohort Study on Healthy Subjects for a Reference Database for Automated Instrumental Evaluations on Neurological Patients
Sign Up to like & getrecommendations! Published in 2017 at "Applied Bionics and Biomechanics"
DOI: 10.1155/2017/8567084
Abstract: Background The increase of sanitary costs related to poststroke rehabilitation requires new sustainable and cost-effective strategies for promoting autonomous and dehospitalized motor training. In the Riprendo@Home and Future Home for Future Communities research projects, the… read more here.
Keywords: reference database; healthy subjects; daily life; life gestures ... See more keywords
The use of taxon-specific reference databases compromises metagenomic classification
Sign Up to like & getrecommendations! Published in 2020 at "BMC Genomics"
DOI: 10.1186/s12864-020-6592-2
Abstract: A recent article in BMC Genomics describes a new bioinformatics tool, HumanMycobiomeScan, to classify fungal taxa in metagenomic samples. This tool was used to characterize the gut mycobiome of hunter-gatherers and Western populations, resulting in… read more here.
Keywords: taxon specific; classification; reference databases; reference ... See more keywords
Human Metabolome Reference Database in a Biracial Cohort across the Adult Lifespan
Sign Up to like & getrecommendations! Published in 2023 at "Metabolites"
DOI: 10.3390/metabo13050591
Abstract: As one of the OMICS in systems biology, metabolomics defines the metabolome and simultaneously quantifies numerous metabolites that are final or intermediate products and effectors of upstream biological processes. Metabolomics provides accurate information that helps… read more here.
Keywords: reference database; reference; across adult; adult lifespan ... See more keywords
Be positive: customized reference databases and new, local barcodes balance false taxonomic assignments in metabarcoding studies
Sign Up to like & getrecommendations! Published in 2023 at "PeerJ"
DOI: 10.7717/peerj.14616
Abstract: Background In metabarcoding analyses, the taxonomic assignment is crucial to place sequencing data in biological and ecological contexts. This fundamental step depends on a reference database, which should have a good taxonomic coverage to avoid… read more here.
Keywords: reference database; reference databases; taxonomic assignment; database ... See more keywords