Unsupervised biodiversity estimation using proteomic fingerprints from MALDI‐TOF MS data
Sign Up to like & getrecommendations! Published in 2020 at "Limnology and Oceanography: Methods"
DOI: 10.1002/lom3.10358
Abstract: Species identification using matrix assisted laser desorption/ionization time‐of‐flight mass spectrometry (MALDI‐TOF MS) data strongly relies on reference libraries to differentiate species. Because comprehensive reference libraries, especially for metazoans, are rare, we explored the accuracy of… read more here.
Keywords: reference libraries; maldi tof; biodiversity; tof data ... See more keywords
Augmentation of MS/MS Libraries with Spectral Interpolation for Improved Identification
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Chemical Information and Modeling"
DOI: 10.1021/acs.jcim.2c00620
Abstract: Tandem mass spectrometry (MS/MS) is a primary tool for the identification of small molecules and metabolites where resultant spectra are most commonly identified by matching them with spectra in MS/MS reference libraries. The high degree… read more here.
Keywords: reference libraries; identification; experimental spectra; interpolated spectra ... See more keywords
Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb
Sign Up to like & getrecommendations! Published in 2022 at "Molecular Ecology Resources"
DOI: 10.1111/1755-0998.13723
Abstract: DNA barcoding and metabarcoding are revolutionizing the study and survey of biodiversity. In order to assign taxonomic labels to the DNA sequence data retrieved, these methods are strongly dependent on comprehensive and accurate reference databases.… read more here.
Keywords: reference libraries; dna; reference; package refdb ... See more keywords
Enhancing DNA barcode reference libraries by harvesting terrestrial arthropods at the Smithsonian's National Museum of Natural History
Sign Up to like & getrecommendations! Published in 2023 at "Biodiversity Data Journal"
DOI: 10.3897/bdj.11.e100904
Abstract: The use of DNA barcoding has revolutionised biodiversity science, but its application depends on the existence of comprehensive and reliable reference libraries. For many poorly known taxa, such reference sequences are missing even at higher-level… read more here.
Keywords: reference libraries; natural history; smithsonian national; reference ... See more keywords