Prediction of regulatory motifs from human Chip-sequencing data using a deep learning framework
Sign Up to like & getrecommendations! Published in 2019 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkz672
Abstract: Abstract The identification of transcription factor binding sites and cis-regulatory motifs is a frontier whereupon the rules governing protein–DNA binding are being revealed. Here, we developed a new method (DEep Sequence and Shape mOtif or… read more here.
Keywords: learning framework; regulatory motifs; using deep; deep learning ... See more keywords
Discovering cis-Regulatory Motifs.
Sign Up to like & getrecommendations! Published in 2017 at "Cold Spring Harbor protocols"
DOI: 10.1101/pdb.prot093203
Abstract: This protocol describes a suite of tools for motif finding, using cis-regulatory motifs as an example. The first part of this protocol demonstrates the use of MEME (ab initio motif discovery), JASPAR (a motif database),… read more here.
Keywords: motif; discovering cis; protocol; regulatory motifs ... See more keywords
Deep Learning for SARS COV-2 Genome Sequences
Sign Up to like & getrecommendations! Published in 2021 at "IEEE Access"
DOI: 10.1109/access.2021.3073728
Abstract: The SARS-CoV-2 virus which originated in Wuhan, China has since spread throughout the world and is affecting millions of people. When there is a novel virus outbreak, it is crucial to quickly determine if the… read more here.
Keywords: cov genome; neural network; learning sars; regulatory motifs ... See more keywords