A comprehensive review and comparison of different computational methods for protein remote homology detection
Sign Up to like & getrecommendations! Published in 2018 at "Briefings in Bioinformatics"
DOI: 10.1093/bib/bbw108
Abstract: Protein remote homology detection is one of the most fundamental and central problems for the studies of protein structures and functions, aiming to detect the distantly evolutionary relationships among proteins via computational methods. During the… read more here.
Keywords: computational methods; remote homology; protein remote; homology detection ... See more keywords
Soft Ngram Representation and Modeling for Protein Remote Homology Detection
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DOI: 10.1109/tcbb.2016.2595575
Abstract: Remote homology detection represents a central problem in bioinformatics, where the challenge is to detect functionally related proteins when their sequence similarity is low. Recent solutions employ representations derived from the sequence profile, obtained by… read more here.
Keywords: remote homology; soft ngram; homology detection; profile ... See more keywords
Protein remote homology detection based on bidirectional long short-term memory
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DOI: 10.1186/s12859-017-1842-2
Abstract: BackgroundProtein remote homology detection plays a vital role in studies of protein structures and functions. Almost all of the traditional machine leaning methods require fixed length features to represent the protein sequences. However, it is… read more here.
Keywords: bidirectional long; remote homology; protein remote; homology detection ... See more keywords