Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads
Sign Up to like & getrecommendations! Published in 2019 at "Nature Communications"
DOI: 10.1038/s41467-019-13355-3
Abstract: The abundant repetitive sequences in complex eukaryotic genomes cause fragmented assemblies, which lose value as reference genomes, often due to incomplete gene sequences and unanchored or mispositioned contigs on chromosomes. Here we report a genome… read more here.
Keywords: gene sequences; repetitive sequences; assembly chromosome; hera ... See more keywords
The role of repetitive sequences in re-patterning of major rDNA clusters in Lepidoptera.
Sign Up to like & getrecommendations! Published in 2023 at "Genome biology and evolution"
DOI: 10.1093/gbe/evad090
Abstract: Genes for major ribosomal RNAs (rDNA) are present in multiple copies mainly organized in tandem arrays. Number and position of rDNA loci can change dynamically and their re-patterning is presumably driven by other repetitive sequences.… read more here.
Keywords: repetitive sequences; sequences patterning; patterning major; rdna clusters ... See more keywords
Video Folding: Increased Framerate for Semi-Repetitive Sequences
Sign Up to like & getrecommendations! Published in 2021 at "IEEE Transactions on Visualization and Computer Graphics"
DOI: 10.1109/tvcg.2020.2992670
Abstract: We introduce a technique to synthetically increase the framerate of semi-repetitive videos (i.e., videos of motion that repeats but not in an identical fashion) to aid in visualization. By reordering and combining frames from all… read more here.
Keywords: video folding; increased framerate; repetitive sequences; folding increased ... See more keywords
Karyotype conservation and genomic organization of repetitive sequences in the leaf-cutting ant Atta cephalotes (Linnaeus, 1758) (Formicidae: Myrmicinae).
Sign Up to like & getrecommendations! Published in 2022 at "Genome"
DOI: 10.1139/gen-2021-0129
Abstract: Leaf-cutting ants are among the New World's most conspicuous and studied ant species due to their notable ecological and economic role. Cytogenetic studies carried out in Atta show remarkable karyotype conservation among the species. We… read more here.
Keywords: karyotype conservation; conservation; repetitive sequences; atta cephalotes ... See more keywords
Degenerate codon mixing for PCR-based manipulation of highly repetitive sequences
Sign Up to like & getrecommendations! Published in 2018 at "BMC Research Notes"
DOI: 10.1186/s13104-018-3298-5
Abstract: ObjectiveRepeat expansion of polyglutamine tracks leads to a group of inherited human neurodegenerative disorders. Studying such repetitive sequences is required to gain insight into the pathophysiology of these diseases. PCR-based manipulation of repetitive sequences, however,… read more here.
Keywords: degenerate codon; based manipulation; pcr based; repetitive sequences ... See more keywords
To Repeat or Not to Repeat: Repetitive Sequences Regulate Genome Stability in Candida albicans
Sign Up to like & getrecommendations! Published in 2019 at "Genes"
DOI: 10.3390/genes10110866
Abstract: Genome instability often leads to cell death but can also give rise to innovative genotypic and phenotypic variation through mutation and structural rearrangements. Repetitive sequences and chromatin architecture in particular are critical modulators of recombination… read more here.
Keywords: candida albicans; repeat repeat; repeat repetitive; repetitive sequences ... See more keywords
The Complete Mitochondrial Genome of Ophioglossum vulgatum L. Is with Highly Repetitive Sequences: Intergenomic Fragment Transfer and Phylogenetic Analysis
Sign Up to like & getrecommendations! Published in 2022 at "Genes"
DOI: 10.3390/genes13071287
Abstract: Many plant mitochondrial (mt) genomes have been sequenced but few in ferns. Ophioglossum vulgatum represents a typical species of fern genus Ophioglossum with medicinal and scientific value. However, its mt genome structure remains to be… read more here.
Keywords: transfer; complete mitochondrial; repetitive sequences; genome ... See more keywords
Repetitive Sequence Barcode Probe for Karyotype Analysis in Tripidium arundinaceum
Sign Up to like & getrecommendations! Published in 2022 at "International Journal of Molecular Sciences"
DOI: 10.3390/ijms23126726
Abstract: The barcode probe is a convenient and efficient tool for molecular cytogenetics. Tripidium arundinaceum, as a polyploid wild allied genus of Saccharum, is a useful genetic resource that confers biotic and abiotic stress resistance for… read more here.
Keywords: barcode; tripidium arundinaceum; barcode probe; repetitive sequence ... See more keywords