A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies.
Sign Up to like & getrecommendations! Published in 2017 at "Journal of biotechnology"
DOI: 10.1016/j.jbiotec.2017.07.010
Abstract: The rapid development of next generation sequencing technology has greatly increased the amount of available microbial genomes. As a result of this development, there is a rising demand for fast and automated approaches in analyzing… read more here.
Keywords: comparative genomics; platforms comparative; genomics recent; bioinformatics platforms ... See more keywords
A comprehensive review of bioinformatics tools for chromatin loop calling
Sign Up to like & getrecommendations! Published in 2023 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbad072
Abstract: Precisely calling chromatin loops has profound implications for further analysis of gene regulation and disease mechanisms. Technological advances in chromatin conformation capture (3C) assays make it possible to identify chromatin loops in the genome. However,… read more here.
Keywords: comprehensive review; loop; loop calling; bioinformatics tools ... See more keywords