Agrobacterium Transformation in the Rice Genome.
Sign Up to like & getrecommendations! Published in 2020 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-9865-4_17
Abstract: Modification of the rice genome by Agrobacterium-mediated transformation is a general technique that can be easily performed today. Successful methods were established by vigorous studies on the culture system and the elucidation of Agrobacterium transformation… read more here.
Keywords: rice genome; agrobacterium transformation; rice; transformation ... See more keywords
A convolution based computational approach towards DNA N6-methyladenine site identification and motif extraction in rice genome
Sign Up to like & getrecommendations! Published in 2021 at "Scientific Reports"
DOI: 10.1038/s41598-021-89850-9
Abstract: DNA N6-methylation (6mA) in Adenine nucleotide is a post replication modification responsible for many biological functions. Automated and accurate computational methods can help to identify 6mA sites in long genomes saving significant time and money.… read more here.
Keywords: rice genome; site; site identification; motif extraction ... See more keywords
i6mA-Pred: identifying DNA N6-methyladenine sites in the rice genome
Sign Up to like & getrecommendations! Published in 2019 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btz015
Abstract: Motivation DNA N6-methyladenine (6mA) is associated with a wide range of biological processes. Since the distribution of 6mA site in the genome is non-random, accurate identification of 6mA sites is crucial for understanding its biological… read more here.
Keywords: dna; sites rice; rice genome; i6ma pred ... See more keywords
Genome-wide characterization of i-motifs and their potential roles in the stability and evolution of transposable elements in rice.
Sign Up to like & getrecommendations! Published in 2022 at "Nucleic acids research"
DOI: 10.1093/nar/gkac121
Abstract: I-motifs (iMs) are non-canonical DNA secondary structures that fold from cytosine (C)-rich genomic DNA regions termed putative i-motif forming sequences (PiMFSs). The structure of iMs is stabilized by hemiprotonated C-C base pairs, and their functions… read more here.
Keywords: transposable elements; stability; wide characterization; genome wide ... See more keywords
Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome
Sign Up to like & getrecommendations! Published in 2017 at "Rice"
DOI: 10.1186/s12284-017-0175-0
Abstract: BackgroundRice blast is the most serious disease afflicting rice and there is an urgent need for the use of disease resistance (R) genes in blast tolerance breeding programs. Pb1 is classified as a quantitative resistance… read more here.
Keywords: blast; resistance; rice genome; pb1 ... See more keywords
Detection of Highly Divergent Tandem Repeats in the Rice Genome
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DOI: 10.3390/genes12040473
Abstract: Currently, there is a lack of bioinformatics approaches to identify highly divergent tandem repeats (TRs) in eukaryotic genomes. Here, we developed a new mathematical method to search for TRs, which uses a novel algorithm for… read more here.
Keywords: rpwm; highly divergent; trs; tandem repeats ... See more keywords