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   Articles with "rna interactome" as a keyword



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Detecting RNA–RNA interactome

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recommendations! Published in 2022 at "Wiley Interdisciplinary Reviews: RNA"

DOI: 10.1002/wrna.1715

Abstract: The last decade has seen a robust increase in various types of novel RNA molecules and their complexity in gene regulation. RNA molecules play a critical role in cellular events by interacting with other biomolecules,… read more here.

Keywords: rna interactome; rna molecules; rna; detecting rna ... See more keywords
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The SARS-CoV-2 RNA interactome

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recommendations! Published in 2021 at "Molecular Cell"

DOI: 10.1016/j.molcel.2021.04.022

Abstract: SARS-CoV-2 is an RNA virus whose success as a pathogen relies on its abilities to repurpose host RNA-binding proteins (RBPs) and to evade antiviral RBPs. To uncover the SARS-CoV-2 RNA interactome, we here develop a… read more here.

Keywords: cov rna; rna interactome; host; rbps ... See more keywords
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Hfq-licensed RNA–RNA interactome in Pseudomonas aeruginosa reveals a keystone sRNA

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recommendations! Published in 2023 at "Proceedings of the National Academy of Sciences of the United States of America"

DOI: 10.1073/pnas.2218407120

Abstract: Significance Hfq is a key posttranscriptional regulator that modulates base-pairing interactions between sRNAs and their target mRNAs. Although there are more than 100 different sRNAs in Pseudomonas aeruginosa, information on their regulatory targets was available… read more here.

Keywords: rna interactome; hfq licensed; pseudomonas aeruginosa; interactome pseudomonas ... See more keywords
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RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility.

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recommendations! Published in 2021 at "Nucleic acids research"

DOI: 10.1093/nar/gkab997

Abstract: Establishing an RNA-associated interaction repository facilitates the system-level understanding of RNA functions. However, as these interactions are distributed throughout various resources, an essential prerequisite for effectively applying these data requires that they are deposited together… read more here.

Keywords: rna interactome; system; scoring system; confidence scoring ... See more keywords

RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins

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recommendations! Published in 2023 at "Nucleic Acids Research"

DOI: 10.1093/nar/gkad216

Abstract: Abstract RNA-binding proteins (RPBs) are deeply involved in fundamental cellular processes in bacteria and are vital for their survival. Despite this, few studies have so far been dedicated to direct and global identification of bacterial… read more here.

Keywords: rna interactome; rna binding; interactome capture; escherichia coli ... See more keywords
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RNAInter in 2020: RNA interactome repository with increased coverage and annotation

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recommendations! Published in 2020 at "Nucleic Acids Research"

DOI: 10.1093/nar/gkz804

Abstract: Abstract Research on RNA-associated interactions has exploded in recent years, and increasing numbers of studies are not limited to RNA–RNA and RNA–protein interactions but also include RNA–DNA/compound interactions. To facilitate the development of the interactome… read more here.

Keywords: rna interactome; rna; repository; rna associated ... See more keywords
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Methods to Analyze the Non-Coding RNA Interactome—Recent Advances and Challenges

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recommendations! Published in 2022 at "Frontiers in Genetics"

DOI: 10.3389/fgene.2022.857759

Abstract: Most of the human genome is transcribed to generate a multitude of non-coding RNAs. However, while these transcripts have generated an immense amount of scientific interest, their biological function remains a subject of an intense… read more here.

Keywords: rna interactome; analyze non; coding rnas; methods analyze ... See more keywords
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The RNA interactome of human telomerase RNA reveals a coding-independent role for a histone mRNA in telomere homeostasis

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recommendations! Published in 2018 at "eLife"

DOI: 10.7554/elife.40037

Abstract: Telomerase RNA (TR) provides the template for DNA repeat synthesis at telomeres and is essential for genome stability in continuously dividing cells. We mapped the RNA interactome of human TR (hTR) and identified a set… read more here.

Keywords: rna interactome; telomerase rna; histone mrna; rna ... See more keywords