Evaluation of two public genome references for chinese hamster ovary cells in the context of rna‐seq based gene expression analysis
Sign Up to like & getrecommendations! Published in 2017 at "Biotechnology and Bioengineering"
DOI: 10.1002/bit.26290
Abstract: RNA‐Seq is a powerful transcriptomics tool for mammalian cell culture process development. Successful RNA‐Seq data analysis requires a high quality reference for read mapping and gene expression quantification. Currently, there are two public genome references… read more here.
Keywords: seq; analysis; genome; gene ... See more keywords
Integrated analysis of single‐cell RNA‐seq dataset and bulk RNA‐seq dataset constructs a prognostic model for predicting survival in human glioblastoma
Sign Up to like & getrecommendations! Published in 2022 at "Brain and Behavior"
DOI: 10.1002/brb3.2575
Abstract: Glioblastoma (GBM) is the most common primary malignant brain tumor in adults. For patients with GBM, the median overall survival (OS) is 14.6 months and the 5‐year survival rate is 7.2%. It is imperative to… read more here.
Keywords: rna seq; seq dataset; model;
RNA‐seq and ATAC‐seq analysis of CD163 + macrophage‐induced progestin‐insensitive endometrial cancer cells
Sign Up to like & getrecommendations! Published in 2022 at "Cancer Medicine"
DOI: 10.1002/cam4.5396
Abstract: Progestins are used as fertility‐sparing regimens for young patients with stage 1A endometrioid endometrial cancer (EEC) and atypical endometrial hyperplasia (AEH). CD163+ macrophages promote estrogen‐dependent EEC development, but whether they induce progestin insensitivity remains unclear.… read more here.
Keywords: endometrial cancer; rna seq; cd163; seq atac ... See more keywords
RNA‐seq and ATAC‐seq analyses of multilineage differentiating stress enduring cells: Comparison with dermal fibroblasts
Sign Up to like & getrecommendations! Published in 2022 at "Cell Biology International"
DOI: 10.1002/cbin.11834
Abstract: The aim of this study is to characterize the molecular properties of multilineage differentiating stress‐enduring (Muse) cells compared with dermal fibroblasts (FBs) and to characterize differences in their transcriptomes and open chromatin regions that are… read more here.
Keywords: muse cells; atac seq; seq; seq analyses ... See more keywords
Female rat transcriptome response to infraorbital nerve transection differs from that of males: RNA‐seq
Sign Up to like & getrecommendations! Published in 2017 at "Journal of Comparative Neurology"
DOI: 10.1002/cne.24045
Abstract: The effects of infraorbital nerve (ION) transection on gene expression in the adult female rat barrel cortex were investigated using RNA sequencing. After a 24‐hour survival duration, 28 genes were differentially regulated by ION transection.… read more here.
Keywords: rna seq; female rat; transection; infraorbital nerve ... See more keywords
Immune and environment‐driven gene expression during invasion: An eco‐immunological application of RNA‐Seq
Sign Up to like & getrecommendations! Published in 2019 at "Ecology and Evolution"
DOI: 10.1002/ece3.5249
Abstract: Abstract Host–pathogen associations change rapidly during a biological invasion and are predicted to impose strong selection on immune function. It has been proposed that the invader may experience an abrupt reduction in pathogen‐mediated selection (“enemy… read more here.
Keywords: immune; invasion; selection; expression ... See more keywords
Transcriptional profiling of genes in tongue epithelial tissue from immature and adult rats by the RNA‐Seq technique
Sign Up to like & getrecommendations! Published in 2019 at "Journal of Cellular Physiology"
DOI: 10.1002/jcp.29211
Abstract: Children are more sensitive than adults to bitterness and thus dislike bitter tastes more than adults do. However, why children are more sensitive to bitterness has never been revealed. To elucidate the effects of age… read more here.
Keywords: immature; adult rats; immature adult; rna seq ... See more keywords
Systematic identification and characterization of viral small RNAs from small RNA‐Seq data
Sign Up to like & getrecommendations! Published in 2023 at "Journal of Medical Virology"
DOI: 10.1002/jmv.28617
Abstract: Virus‐encoded small RNAs (vsRNAs) have been reported to play an important role in viral infections. Unfortunately, there is still a lack of a systematic characterization and resource of vsRNAs. Herein, we identified a total of… read more here.
Keywords: seq data; vsrnas identified; rna seq; small rna ... See more keywords
RNA‐Seq detects a SAMD12‐EXT1 fusion transcript and leads to the discovery of an EXT1 deletion in a child with multiple osteochondromas
Sign Up to like & getrecommendations! Published in 2019 at "Molecular Genetics & Genomic Medicine"
DOI: 10.1002/mgg3.560
Abstract: We describe a patient presenting with pachygyria, epilepsy, developmental delay, short stature, failure to thrive, facial dysmorphisms, and multiple osteochondromas. read more here.
Keywords: samd12 ext1; multiple osteochondromas; ext1 fusion; detects samd12 ... See more keywords
RNA-Seq in Nonmodel Organisms.
Sign Up to like & getrecommendations! Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1103-6_8
Abstract: RNA-Seq is nowadays an indispensable approach for comparative transcriptome profiling in model and nonmodel organisms. Analyzing RNA-Seq data from nonmodel organisms poses unique challenges, due to unavailability of a high-quality genome reference and to relative… read more here.
Keywords: nonmodel organisms; rna seq; analysis;
RNA-Seq Data Analysis in Galaxy.
Sign Up to like & getrecommendations! Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1307-8_20
Abstract: A complete RNA-Seq analysis involves the use of several different tools, with substantial software and computational requirements. The Galaxy platform simplifies the execution of such bioinformatics analyses by embedding the needed tools in its web… read more here.
Keywords: data analysis; analysis; seq data; analysis galaxy ... See more keywords