VeTra: a tool for trajectory inference based on RNA velocity
Sign Up to like & getrecommendations! Published in 2021 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btab364
Abstract: Abstract Motivation Trajectory inference (TI) for single cell RNA sequencing (scRNAseq) data is a powerful approach to interpret dynamic cellular processes such as cell cycle and development. Still, however, accurate inference of trajectory is challenging.… read more here.
Keywords: rna velocity; trajectory; based rna; trajectory inference ... See more keywords
RNA velocity unraveled
Sign Up to like & getrecommendations! Published in 2022 at "PLoS Computational Biology"
DOI: 10.1371/journal.pcbi.1010492
Abstract: We perform a thorough analysis of RNA velocity methods, with a view towards understanding the suitability of the various assumptions underlying popular implementations. In addition to providing a self-contained exposition of the underlying mathematics, we… read more here.
Keywords: rna velocity; biology; velocity unraveled;
Cascade Forest-Based Model for Prediction of RNA Velocity
Sign Up to like & getrecommendations! Published in 2022 at "Molecules"
DOI: 10.3390/molecules27227873
Abstract: In recent years, single-cell RNA sequencing technology (scRNA-seq) has developed rapidly and has been widely used in biological and medical research, such as in expression heterogeneity and transcriptome dynamics of single cells. The investigation of… read more here.
Keywords: cell; velocity; prediction; model ... See more keywords