Molecular characterization and phylogenetic analysis of crabs (Crustacea: Decapoda: Brachyura) based on mitochondrial COI and 16S rRNA genes
Sign Up to like & getrecommendations! Published in 2021 at "Conservation Genetics Resources"
DOI: 10.1007/s12686-021-01212-9
Abstract: This study aims to know the efficiency of the partial sequence of COI and 16S rRNA genes for the identification of crab species and to determine their phylogenetic relationships. A total of 36 sequences of… read more here.
Keywords: phylogenetic analysis; 16s rrna; coi; coi 16s ... See more keywords
Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs
Sign Up to like & getrecommendations! Published in 2019 at "Scientific Reports"
DOI: 10.1038/s41598-019-47807-z
Abstract: Based on the structural complexity of ribosomes, 16S rRNA genes are considered species-specific and hence used for bacterial phylogenetic analysis. However, a growing number of reports suggest the occurrence of horizontal gene transfer, raising genealogical… read more here.
Keywords: rrna; rrna genes; 16s rrna; thermus thermophilus ... See more keywords
MarkerMAG: linking metagenome-assembled genomes (MAGs) with 16S rRNA marker genes using paired-end short reads
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac398
Abstract: MOTIVATION Metagenome-assembled genomes (MAGs) have substantially extended our understanding of microbial functionality. However, 16S rRNA genes, which are commonly used in phylogenetic analysis and environmental surveys, are often missing from MAGs. Here, we developed MarkerMAG,… read more here.
Keywords: rrna genes; mags 16s; 16s rrna; metagenome assembled ... See more keywords
The CCR4-NOT Complex Maintains Stability and Transcription of rRNA Genes by Repressing Antisense Transcripts
Sign Up to like & getrecommendations! Published in 2019 at "Molecular and Cellular Biology"
DOI: 10.1128/mcb.00320-19
Abstract: The rRNA genes (rDNA) in eukaryotes are organized into highly repetitive gene clusters. Each organism maintains a particular number of copies, suggesting that the rDNA is actively stabilized. We previously identified about 700 Saccharomyces cerevisiae… read more here.
Keywords: rrna genes; unstable rdna; rdna; pop2 ... See more keywords
The potential use of mitochondrial ribosomal genes (12S and 16S) in DNA barcoding and phylogenetic analysis of trematodes
Sign Up to like & getrecommendations! Published in 2022 at "BMC Genomics"
DOI: 10.1186/s12864-022-08302-4
Abstract: Background Genetic markers like the nuclear ribosomal RNA (rRNA) genes, internal transcribed spacer regions, mitochondrial protein-coding genes, and genomes have been utilized for molecular identification of parasitic trematodes. However, challenges such as the design of… read more here.
Keywords: genetic markers; 12s 16s; rrna genes; trematode molecular ... See more keywords