DMclust, a Density‐based Modularity Method for Accurate OTU Picking of 16S rRNA Sequences
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DOI: 10.1002/minf.201600059
Abstract: Clustering 16S rRNA sequences into operational taxonomic units (OTUs) is a crucial step in analyzing metagenomic data. Although many methods have been developed, how to obtain an appropriate balance between clustering accuracy and computational efficiency… read more here.
Keywords: rrna sequences; method; 16s rrna; density based ... See more keywords
DMSC: A Dynamic Multi-Seeds Method for Clustering 16S rRNA Sequences Into OTUs
Sign Up to like & getrecommendations! Published in 2019 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2019.00428
Abstract: Next-generation sequencing (NGS)-based 16S rRNA sequencing by jointly using the PCR amplification and NGS technology is a cost-effective technique, which has been successfully used to study the phylogeny and taxonomy of samples from complex microbiomes… read more here.
Keywords: dmsc; clustering 16s; rrna sequences; dynamic multi ... See more keywords
Reconstruction of the rRNA Sequences of LUCA, with Bioinformatic Implication of the Local Similarities Shared by Them
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DOI: 10.3390/biology11060837
Abstract: Simple Summary In order to explore the origin of 16S, 5S, and 23S ribosomal RNAs in novel views and methods, full lengths of the three rRNA sequences of the last universal common ancestor were reconstructed… read more here.
Keywords: 16s 23s; rrna sequences; similarities shared; short fragments ... See more keywords