Simplitigs as an efficient and scalable representation of de Bruijn graphs
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DOI: 10.1186/s13059-021-02297-z
Abstract: de Bruijn graphs play an essential role in bioinformatics, yet they lack a universal scalable representation. Here, we introduce simplitigs as a compact, efficient, and scalable representation, and ProphAsm, a fast algorithm for their computation.… read more here.
Keywords: scalable representation; bruijn graphs; efficient scalable; representation ... See more keywords