MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments.
Sign Up to like & getrecommendations! Published in 2023 at "Journal of proteome research"
DOI: 10.1021/acs.jproteome.2c00603
Abstract: Liquid chromatography coupled with bottom-up mass spectrometry (LC-MS/MS)-based proteomics is a versatile technology for identifying and quantifying proteins in complex biological mixtures. Postidentification, analysis of changes in protein abundances between conditions requires increasingly complex and… read more here.
Keywords: scalable reproducible; gui versatile; msstatsshiny gui; versatile scalable ... See more keywords
Accelerated, scalable and reproducible AI-driven gravitational wave detection
Sign Up to like & getrecommendations! Published in 2021 at "Nature Astronomy"
DOI: 10.1038/s41550-021-01405-0
Abstract: The development of reusable artificial intelligence (AI) models for wider use and rigorous validation by the community promises to unlock new opportunities in multi-messenger astrophysics. Here we develop a workflow that connects the Data and… read more here.
Keywords: accelerated scalable; gravitational wave; driven gravitational; wave ... See more keywords
Grenepipe: a Flexible, Scalable and Reproducible Pipeline to Automate Variant Calling from Sequence Reads
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac600
Abstract: SUMMARY We developed grenepipe, an all-in-one Snakemake workflow to streamline the data processing from raw high-throughput sequencing data of individuals or populations to genotype variant calls. Our pipeline offers a range of popular software tools… read more here.
Keywords: scalable reproducible; grenepipe flexible; reproducible pipeline; pipeline automate ... See more keywords
Toward scalable, reproducible, and open ocean acoustic research
Sign Up to like & getrecommendations! Published in 2018 at "Journal of the Acoustical Society of America"
DOI: 10.1121/1.5067861
Abstract: As our ability to collect long-term acoustical signals grows we face the challenges of analyzing large datasets, ensuring our findings are reproducible, and sharing our work with collaborators. In this talk, we will give an… read more here.
Keywords: acoustic research; ocean acoustic; toward scalable; reproducible open ... See more keywords