The Chromosome-Scale Genome of Melon Dissects Genetic Architecture of Important Agronomic Traits
Sign Up to like & getrecommendations! Published in 2020 at "iScience"
DOI: 10.1016/j.isci.2020.101422
Abstract: Summary Comparative and evolutionary genomics analyses are the powerful tools to provide mechanistic insights into important agronomic traits. Here, we completed a chromosome-scale assembly of the “neglected” but vital melon subspecies Cucumis melo ssp. agrestis… read more here.
Keywords: genome melon; melon; chromosome scale; important agronomic ... See more keywords
A chromosome-scale genome assembly for the holly (Ilex polyneura) provides insights into genomic adaptations to elevation in Southwest China
Sign Up to like & getrecommendations! Published in 2022 at "Horticulture Research"
DOI: 10.1093/hr/uhab049
Abstract: Abstract Southwest China is a plant diversity hotspot. The near-cosmopolitan genus Ilex (c. 664 spp., Aquifoliaceae) reaches its maximum diversity in this region, with many narrow-range and a few widespread species. Divergent selection on widespread… read more here.
Keywords: elevation; genome; scale genome; southwest china ... See more keywords
Enabling large-scale genome editing at repetitive elements by reducing DNA nicking
Sign Up to like & getrecommendations! Published in 2020 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkaa239
Abstract: Abstract To extend the frontier of genome editing and enable editing of repetitive elements of mammalian genomes, we made use of a set of dead-Cas9 base editor (dBE) variants that allow editing at tens of… read more here.
Keywords: large scale; genome editing; repetitive elements; scale genome ... See more keywords
A Roadmap toward Large-Scale Genome Editing in Crops[OPEN]
Sign Up to like & getrecommendations! Published in 2020 at "Plant Cell"
DOI: 10.1105/tpc.20.00144
Abstract: If the planet does not turn to ash before 2050, farmers will need to produce twice as much on roughly the same available arable land to feed the evergrowing world population. But since the Green… read more here.
Keywords: large scale; roadmap toward; genome editing; editing crops ... See more keywords
The chromosome-scale genome assembly of Castanopsis tibetana provides a powerful comparative framework to study the evolution and adaptation of Fagaceae trees.
Sign Up to like & getrecommendations! Published in 2021 at "Molecular ecology resources"
DOI: 10.1111/1755-0998.13539
Abstract: Fagaceae species are increasingly used as models to elucidate the process and mechanism of adaptation and speciation by integrating ecology, evolution and genomics. The genus Castanopsis belongs to the family Fagaceae and is mainly distributed… read more here.
Keywords: genome assembly; chromosome scale; tibetana; scale genome ... See more keywords
Technical considerations in Hi-C scaffolding and evaluation of chromosome-scale genome assemblies.
Sign Up to like & getrecommendations! Published in 2021 at "Molecular ecology"
DOI: 10.1111/mec.16146
Abstract: The recent development of ecological studies has been fueled by the introduction of massive information based on chromosome-scale genome sequences, even for species for which genetic linkage is not accessible. This was enabled mainly by… read more here.
Keywords: scale genome; chromosome scale; technical considerations; chromosome ... See more keywords
Identification of novel, functional, long noncoding RNAs involved in programmed, large-scale genome rearrangements
Sign Up to like & getrecommendations! Published in 2022 at "RNA"
DOI: 10.1261/rna.079134.122
Abstract: Noncoding RNAs (ncRNAs) make up to ∼98% percent of the transcriptome of a given organism. In recent years, one relatively new class of ncRNAs, long noncoding RNAs (lncRNAs), were shown to be more than mere… read more here.
Keywords: genome rearrangements; large scale; long noncoding; noncoding rnas ... See more keywords
Chromosome-scale genome assembly of brown-spotted flathead Platycephalus sp.1 provides insights into demersal adaptation in flathead fish
Sign Up to like & getrecommendations! Published in 2021 at "Zoological Research"
DOI: 10.24272/j.issn.2095-8137.2021.236
Abstract: Flatheads are valuable commercial fish species endemic to the Indo-West Pacific. Due to their economic value and unique biological traits, such as metamorphosis and camouflage, they serve as ideal marine organisms for studies on demersal… read more here.
Keywords: chromosome scale; flathead platycephalus; scale genome; demersal adaptation ... See more keywords
Chromosome-Scale Genome Assembly and Transcriptome Assembly of Kawakawa Euthynnus affinis; A Tuna-Like Species
Sign Up to like & getrecommendations! Published in 2021 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2021.739781
Abstract: Citation: Havelka M, Sawayama E, Saito T, Yoshitake K, Saka D, Ineno T, Asakawa S, Takagi M, Goto R and Matsubara T (2021) Chromosome-Scale Genome Assembly and Transcriptome Assembly of Kawakawa Euthynnus affinis; A Tuna-Like… read more here.
Keywords: transcriptome assembly; genome assembly; chromosome scale; scale genome ... See more keywords
Chromosome-Scale Genome Assembly and Triterpenoid Saponin Biosynthesis in Korean Bellflower (Platycodon grandiflorum)
Sign Up to like & getrecommendations! Published in 2023 at "International Journal of Molecular Sciences"
DOI: 10.3390/ijms24076534
Abstract: Platycodon grandiflorum belongs to the Campanulaceae family and is an important medicinal and food plant in East Asia. However, on the whole, the genome evolution of P. grandiflorum and the molecular basis of its major… read more here.
Keywords: genome assembly; platycodon grandiflorum; grandiflorum; scale genome ... See more keywords