The Chromosome-Scale Genome of Melon Dissects Genetic Architecture of Important Agronomic Traits
Sign Up to like & getrecommendations! Published in 2020 at "iScience"
DOI: 10.1016/j.isci.2020.101422
Abstract: Summary Comparative and evolutionary genomics analyses are the powerful tools to provide mechanistic insights into important agronomic traits. Here, we completed a chromosome-scale assembly of the “neglected” but vital melon subspecies Cucumis melo ssp. agrestis… read more here.
Keywords: genome melon; melon; chromosome scale; important agronomic ... See more keywords
The chromosomal-scale genome sequencing and assembly of Athetis lepigone
Sign Up to like & getrecommendations! Published in 2024 at "Scientific Data"
DOI: 10.1038/s41597-024-03136-z
Abstract: Athetis lepigone is an emerging highly polyphagous insect pest reported to cause crop damage in several European and Asian countries. However, our understanding of its genetic adaptation mechanisms has been limited due to lack of… read more here.
Keywords: athetis lepigone; genome; chromosomal scale; lepigone ... See more keywords
High-quality chromosome-scale genome assembly of Laudakia wui (Laudakia, Agamidae)
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DOI: 10.1038/s41597-024-04284-y
Abstract: The Laudakia wui, also known as Wui’s rock agama, is a species of agamid lizard endemic to Xizang, China, and is distributed within the Yarlung Zangbo River basin in the Nyingchi city. In order to… read more here.
Keywords: high quality; laudakia wui; chromosome scale; quality chromosome ... See more keywords
The telomere-to-telomere chromosome-scale genome assembly of Acremonium chrysogenum
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DOI: 10.1038/s41597-025-05645-x
Abstract: Acremonium chrysogenum is a notable filamentous fungus recognized for its essential contribution to the pharmaceutical sector through the biosynthesis of cephalosporin C (CPC). CPC functions as a key intermediate in the biosynthesis of β-lactam antibiotics,… read more here.
Keywords: acremonium chrysogenum; telomere telomere; chrysogenum; chromosome scale ... See more keywords
The chromosome-scale genome of Magnolia sinica (Magnoliaceae) provides insights into the conservation of plant species with extremely small populations (PSESP)
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DOI: 10.1093/gigascience/giad110
Abstract: Abstract Magnolia sinica (Magnoliaceae) is a highly threatened tree endemic to southeast Yunnan, China. In this study, we generated for the first time a high-quality chromosome-scale genome sequence from M. sinica, by combining Illumina and… read more here.
Keywords: chromosome scale; sinica magnoliaceae; sinica; scale genome ... See more keywords
A chromosome-scale genome assembly for the holly (Ilex polyneura) provides insights into genomic adaptations to elevation in Southwest China
Sign Up to like & getrecommendations! Published in 2022 at "Horticulture Research"
DOI: 10.1093/hr/uhab049
Abstract: Abstract Southwest China is a plant diversity hotspot. The near-cosmopolitan genus Ilex (c. 664 spp., Aquifoliaceae) reaches its maximum diversity in this region, with many narrow-range and a few widespread species. Divergent selection on widespread… read more here.
Keywords: elevation; genome; scale genome; southwest china ... See more keywords
Enabling large-scale genome editing at repetitive elements by reducing DNA nicking
Sign Up to like & getrecommendations! Published in 2020 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkaa239
Abstract: Abstract To extend the frontier of genome editing and enable editing of repetitive elements of mammalian genomes, we made use of a set of dead-Cas9 base editor (dBE) variants that allow editing at tens of… read more here.
Keywords: large scale; genome editing; repetitive elements; scale genome ... See more keywords
A Roadmap toward Large-Scale Genome Editing in Crops[OPEN]
Sign Up to like & getrecommendations! Published in 2020 at "Plant Cell"
DOI: 10.1105/tpc.20.00144
Abstract: If the planet does not turn to ash before 2050, farmers will need to produce twice as much on roughly the same available arable land to feed the evergrowing world population. But since the Green… read more here.
Keywords: large scale; roadmap toward; genome editing; editing crops ... See more keywords
The chromosome-scale genome assembly of Castanopsis tibetana provides a powerful comparative framework to study the evolution and adaptation of Fagaceae trees.
Sign Up to like & getrecommendations! Published in 2021 at "Molecular ecology resources"
DOI: 10.1111/1755-0998.13539
Abstract: Fagaceae species are increasingly used as models to elucidate the process and mechanism of adaptation and speciation by integrating ecology, evolution and genomics. The genus Castanopsis belongs to the family Fagaceae and is mainly distributed… read more here.
Keywords: genome assembly; chromosome scale; tibetana; scale genome ... See more keywords
Technical considerations in Hi-C scaffolding and evaluation of chromosome-scale genome assemblies.
Sign Up to like & getrecommendations! Published in 2021 at "Molecular ecology"
DOI: 10.1111/mec.16146
Abstract: The recent development of ecological studies has been fueled by the introduction of massive information based on chromosome-scale genome sequences, even for species for which genetic linkage is not accessible. This was enabled mainly by… read more here.
Keywords: scale genome; chromosome scale; technical considerations; chromosome ... See more keywords
Large-scale genome sequencing reveals population separation and selection signatures in major canyon yaks
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DOI: 10.1186/s12864-025-12114-7
Abstract: Through long-term natural and artificial selection, domestic yaks (Bos grunniens) have diverged from wild ancestors and become vital to high-altitude pastoralism, providing meat, milk, fiber, and other essential resources and transportation. Especially, based on the… read more here.
Keywords: breed specific; population; scale genome; large scale ... See more keywords