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   Articles with "scale models" as a keyword



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Synthesizing Systems Biology Knowledge from Omics Using Genome‐Scale Models

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recommendations! Published in 2020 at "PROTEOMICS"

DOI: 10.1002/pmic.201900282

Abstract: Omic technologies have enabled the complete readout of the molecular state of a cell at different biological scales. In principle, the combination of multiple omic data types can provide an integrated view of the entire… read more here.

Keywords: genome scale; scale models; omic data; biology ... See more keywords

Parallelization and High-Performance Computing Enables Automated Statistical Inference of Multi-scale Models.

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recommendations! Published in 2017 at "Cell systems"

DOI: 10.1016/j.cels.2016.12.002

Abstract: Mechanistic understanding of multi-scale biological processes, such as cell proliferation in a changing biological tissue, is readily facilitated by computational models. While tools exist to construct and simulate multi-scale models, the statistical inference of the… read more here.

Keywords: scale models; statistical inference; multi scale; pabc smc ... See more keywords

Variationally derived discontinuity capturing methods: Fine scale models with embedded weak and strong discontinuities

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recommendations! Published in 2018 at "Computer Methods in Applied Mechanics and Engineering"

DOI: 10.1016/j.cma.2018.05.029

Abstract: Abstract This paper presents a new stabilized method that is endowed with variationally derived Discontinuity Capturing (DC) features to model steep advection fronts and discontinuities that arise in multi-phase flows as well as in mixing… read more here.

Keywords: variationally derived; scale models; fine scale; discontinuity capturing ... See more keywords

Global sensitivity analysis of biological multi-scale models.

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recommendations! Published in 2019 at "Current opinion in biomedical engineering"

DOI: 10.1016/j.cobme.2019.09.012

Abstract: Mathematical models of biological systems need to both reflect and manage the inherent complexities of biological phenomena. Through their versatility and ability to capture behavior at multiple scales, multi-scale models offer a valuable approach. Due… read more here.

Keywords: scale models; analysis; sensitivity analysis; multi scale ... See more keywords
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A review on experimental research using scale models for buildings: Application and methodologies

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recommendations! Published in 2017 at "Energy and Buildings"

DOI: 10.1016/j.enbuild.2017.02.060

Abstract: A complete review on scale model testing for buildings, considering a wide range of methodologies and new manufacturing techniques, in areas such as statics and dynamics, acoustics, lighting, aerodynamics and thermodynamics for energy efficiency is… read more here.

Keywords: models buildings; scale models; review experimental; scale model ... See more keywords

A posteriori tests of subgrid-scale models in an isothermal turbulent channel flow

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recommendations! Published in 2019 at "Physics of Fluids"

DOI: 10.1063/1.5091829

Abstract: This paper studies the large-eddy simulation (LES) of isothermal turbulent channel flows. We investigate zero-equation algebraic models without wall function or wall model: functional models, structural models and mixed models. In addition to models from… read more here.

Keywords: turbulent channel; posteriori tests; scale models; subgrid scale ... See more keywords

Parameter inference for enzyme and temperature constrained genome-scale models

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recommendations! Published in 2023 at "Scientific Reports"

DOI: 10.1101/2022.07.05.498798

Abstract: The metabolism of all living organisms is dependent on temperature, and therefore, having a good method to predict temperature effects at a system level is of importance. A recently developed Bayesian computational framework for enzyme… read more here.

Keywords: temperature constrained; scale models; enzyme temperature; temperature ... See more keywords

Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing

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recommendations! Published in 2024 at "Microbial Biotechnology"

DOI: 10.1111/1751-7915.14396

Abstract: Building models is essential for understanding the functions and dynamics of microbial communities. Metabolic models built on genome‐scale metabolic network reconstructions (GENREs) are especially relevant as a means to decipher the complex interactions occurring among… read more here.

Keywords: community scale; models microbiomes; metabolic modelling; scale models ... See more keywords

Quantifying macro‐evolutionary patterns of trait mean and variance with phylogenetic location–scale models

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recommendations! Published in 2025 at "Methods in Ecology and Evolution"

DOI: 10.1111/2041-210x.70160

Abstract: Understanding how both the mean (location) and variance (scale) of traits differ among species and lineages is fundamental to unveiling macroevolutionary patterns. Yet, traditional phylogenetic comparative methods primarily focus on modelling mean trait values, often… read more here.

Keywords: variance; location; phylogenetic location; scale models ... See more keywords

The need for large-scale distribution data to estimate regional changes in species richness under future climate change

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recommendations! Published in 2017 at "Diversity and Distributions"

DOI: 10.1111/ddi.12634

Abstract: Aim Species distribution models built with geographically restricted data often fail to capture the full range of conditions experienced by species across their entire distribution area. Using such models to predict distribution shifts under future… read more here.

Keywords: scale models; species richness; restricted scale; broad scale ... See more keywords

Specifying Location-Scale Models for Heterogeneous Variances as Multilevel SEMs

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recommendations! Published in 2020 at "Organizational Research Methods"

DOI: 10.1177/1094428120913083

Abstract: Standard multilevel models focus on variables that predict the mean while the within-group variability is largely treated as a nuisance. Recent work has shown the advantage of including predictors for both the mean (the location… read more here.

Keywords: specifying location; model; location scale; scale models ... See more keywords