Evidence for selective sweeps in the MHC gene repertoire of various cattle breeds.
Sign Up to like & getrecommendations! Published in 2023 at "Animal biotechnology"
DOI: 10.1080/10495398.2023.2196317
Abstract: Major Histocompatibility Complex (MHC) genes are among the immune genes that have been extensively studied in vertebrates and are necessary for adaptive immunity. In the immunological response to infectious diseases, they play several significant roles.… read more here.
Keywords: mhc; evidence selective; selective sweeps; selection signatures ... See more keywords
Discovery of Ongoing Selective Sweeps within Anopheles Mosquito Populations Using Deep Learning
Sign Up to like & getrecommendations! Published in 2020 at "Molecular Biology and Evolution"
DOI: 10.1093/molbev/msaa259
Abstract: Abstract Identification of partial sweeps, which include both hard and soft sweeps that have not currently reached fixation, provides crucial information about ongoing evolutionary responses. To this end, we introduce partialS/HIC, a deep learning method… read more here.
Keywords: selective sweeps; mosquito populations; deep learning; partials hic ... See more keywords
HaploSweep: Detecting and Distinguishing Recent Soft and Hard Selective Sweeps through Haplotype Structure
Sign Up to like & getrecommendations! Published in 2024 at "Molecular Biology and Evolution"
DOI: 10.1093/molbev/msae192
Abstract: Abstract Identifying soft selective sweeps using genomic data is a challenging yet crucial task in population genetics. In this study, we present HaploSweep, a novel method for detecting and categorizing soft and hard selective sweeps… read more here.
Keywords: selective sweeps; haplosweep; soft sweeps; hard selective ... See more keywords
Bovine Genome Database: new curated collection of selective sweeps in bovine populations across the world.
Sign Up to like & getrecommendations! Published in 2025 at "Nucleic acids research"
DOI: 10.1093/nar/gkaf1214
Abstract: Abstract Mapping genome-wide selective sweeps is of high relevance in cattle population genomics, having successfully identified thousands of genomic regions and candidate genes, with potential to reveal links to agriculturally important traits such as those… read more here.
Keywords: selective sweeps; genome database; new curated; database new ... See more keywords
Genetic diversity analysis of French goat populations reveals selective sweeps involved in their differentiation
Sign Up to like & getrecommendations! Published in 2019 at "Animal Genetics"
DOI: 10.1111/age.12752
Abstract: Summary After domestication 11 000 years ago in Asia Minor, the goat followed human migration to Europe and Asia. It was then introduced in Africa and is now raised all over the world. In this… read more here.
Keywords: selective sweeps; genetic diversity; analysis; goat ... See more keywords
Evidence of hard‐selective sweeps suggests independent adaptation to insecticides in Colorado potato beetle (Coleoptera: Chrysomelidae) populations
Sign Up to like & getrecommendations! Published in 2022 at "Evolutionary Applications"
DOI: 10.1111/eva.13498
Abstract: Pesticide resistance provides one of the best examples of rapid evolution to environmental change. The Colorado potato beetle has a long and noteworthy history as a super-pest due to its ability to repeatedly develop resistance… read more here.
Keywords: colorado potato; hard selective; selective sweeps; potato beetle ... See more keywords
Soft selective sweeps: Addressing new definitions, evaluating competing models, and interpreting empirical outliers
Sign Up to like & getrecommendations! Published in 2022 at "PLoS Genetics"
DOI: 10.1371/journal.pgen.1010022
Abstract: The ability to accurately identify and quantify genetic signatures associated with soft selective sweeps based on patterns of nucleotide variation has remained controversial. We here provide counter viewpoints to recent publications in PLOS Genetics that… read more here.
Keywords: new definitions; sweeps addressing; empirical outliers; soft selective ... See more keywords
Identifying and Classifying Shared Selective Sweeps from Multilocus Data.
Sign Up to like & getrecommendations! Published in 2020 at "Genetics"
DOI: 10.1534/genetics.120.303137
Abstract: Positive selection causes beneficial alleles to rise to high frequency, resulting in a selective sweep of the diversity surrounding the selected sites. Accordingly, the signature of a selective sweep in an ancestral population may still… read more here.
Keywords: multilocus data; shared selective; selective sweeps; classifying shared ... See more keywords
Identification of selective sweep and associated QTL traits in Iranian Ovis aries and Ovis orientalis populations
Sign Up to like & getrecommendations! Published in 2024 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2024.1414717
Abstract: Introduction Identifying genomic regions under selection is the most challenging issue for improving important traits in animals. Few studies have focused on identifying genomic regions under selection in sheep. The aim of this study was… read more here.
Keywords: selective sweeps; domestic wild; qtl traits; selection ... See more keywords
On the Unfounded Enthusiasm for Soft Selective Sweeps III: The Supervised Machine Learning Algorithm That Isn’t
Sign Up to like & getrecommendations! Published in 2021 at "Genes"
DOI: 10.3390/genes12040527
Abstract: In the last 15 years or so, soft selective sweep mechanisms have been catapulted from a curiosity of little evolutionary importance to a ubiquitous mechanism claimed to explain most adaptive evolution and, in some cases,… read more here.
Keywords: selective sweeps; machine learning; supervised machine; soft selective ... See more keywords
Interspecific Gene Flow and Selective Sweeps in Picea wilsonii, P. neoveitchii and P. likiangensis
Sign Up to like & getrecommendations! Published in 2022 at "Plants"
DOI: 10.3390/plants11212993
Abstract: Genome-wide single nucleotide polymorphism (SNP) markers were obtained by genotyping-by-sequencing (GBS) technology to study the genetic relationships, population structure, gene flow and selective sweeps during species differentiation of Picea wilsonii, P. neoveitchii and P. likiangensis… read more here.
Keywords: gene flow; likiangensis; neoveitchii likiangensis; selective sweeps ... See more keywords