De novo RNA-Seq analysis in sensitive rice cultivar and comparative transcript profiling in contrasting genotypes reveal genetic biomarkers for fluoride-stress response.
Sign Up to like & getrecommendations! Published in 2020 at "Environmental pollution"
DOI: 10.1016/j.envpol.2020.115378
Abstract: The fluoride-sensitive indica rice cultivar, IR-64 was subjected to NaF-treatment for 25 days, following which RNA-Seq analysis identified significant up and down regulation of 1,303 and 93 transcripts respectively. Gene ontology (GO) enrichment analysis classified… read more here.
Keywords: seq analysis; cultivar; analysis; rice cultivar ... See more keywords
Comparative RNA-seq analysis of citrus fruit in response to infection with three major postharvest fungi
Sign Up to like & getrecommendations! Published in 2018 at "Postharvest Biology and Technology"
DOI: 10.1016/j.postharvbio.2018.08.012
Abstract: Abstract Green mold, blue mold and sour rot caused by Penicillium digitatum, Penicillium italicum and Geotrichum citri-aurantii infections, respectively, are major fungal diseases of citrus fruit. The above-mentioned diseases present a great threat to fruit… read more here.
Keywords: seq analysis; fruit; citrus fruit; rna seq ... See more keywords
RNA-Seq analysis in an avian model of maternal phenylketonuria.
Sign Up to like & getrecommendations! Published in 2019 at "Molecular genetics and metabolism"
DOI: 10.1016/j.ymgme.2018.09.003
Abstract: Cardiac malformations (CVMs) are a leading cause of infant morbidity and mortality. CVMs are particularly prevalent when the developing fetus is exposed to high levels of phenylalanine in-utero in mothers with Phenylketonuria. Yet, elucidating the… read more here.
Keywords: seq analysis; avian model; model maternal; analysis avian ... See more keywords
MAGenTA: a Galaxy implemented tool for complete Tn‐Seq analysis and data visualization
Sign Up to like & getrecommendations! Published in 2017 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btx320
Abstract: Motivation: Transposon insertion sequencing (Tn‐Seq) is a microbial systems‐level tool, that can determine on a genome‐wide scale and in high‐throughput, whether a gene, or a specific genomic region, is important for fitness under a specific… read more here.
Keywords: genome wide; seq analysis; analysis; visualization ... See more keywords
RNA-seq analysis of molecular heterogeneity peripheral blood mononuclear cells in systemic lupus erythematosus
Sign Up to like & getrecommendations! Published in 2019 at "Chinese Medical Journal"
DOI: 10.1097/cm9.0000000000000164
Abstract: Systemic lupus erythematosus (SLE) is an autoimmune leukocyte responses. In this study, we explored the disease characterized by a broad spectrum of clinical transcriptional signature of PBMCs from clinically and manifestations. Although great progress has… read more here.
Keywords: lupus erythematosus; analysis molecular; seq analysis; rna seq ... See more keywords
RNA‐seq analysis of ageing human retinal pigment epithelium: Unexpected up‐regulation of visual cycle gene transcription
Sign Up to like & getrecommendations! Published in 2021 at "Journal of Cellular and Molecular Medicine"
DOI: 10.1111/jcmm.16569
Abstract: Ageing presents adverse effects on the retina and is the primary risk factor for age‐related macular degeneration (AMD). We report the first RNA‐seq analysis of age‐related transcriptional changes in the human retinal pigment epithelium (RPE),… read more here.
Keywords: transcription; seq analysis; human retinal; cycle ... See more keywords
Discovery of Pantoea stewartii ssp. stewartii genes important for survival in corn xylem through a Tn-Seq analysis.
Sign Up to like & getrecommendations! Published in 2018 at "Molecular plant pathology"
DOI: 10.1111/mpp.12669
Abstract: The bacterium Pantoea stewartii ssp. stewartii causes Stewart's wilt disease in corn. Pantoea stewartii is transmitted to plants via corn flea beetles, where it first colonizes the apoplast causing water-soaked lesions, and then migrates to… read more here.
Keywords: corn; seq analysis; pantoea stewartii; stewartii ... See more keywords
Single-cell RNA-seq analysis reveals the progression of human osteoarthritis
Sign Up to like & getrecommendations! Published in 2019 at "Annals of the Rheumatic Diseases"
DOI: 10.1136/annrheumdis-2017-212863
Abstract: Objectives Understanding the molecular mechanisms underlying human cartilage degeneration and regeneration is helpful for improving therapeutic strategies for treating osteoarthritis (OA). Here, we report the molecular programmes and lineage progression patterns controlling human OA pathogenesis… read more here.
Keywords: single cell; seq analysis; analysis; cell rna ... See more keywords
Non-biased RNA-Seq Analysis of Cardiac Tissues post Acute Lung Injury
Sign Up to like & getrecommendations! Published in 2023 at "Physiology"
DOI: 10.1152/physiol.2023.38.s1.5718897
Abstract: Patients suffering from acute lung injury (ALI) are at a high risk of developing cardiac arrhythmias. Our recent study demonstrated that bleomycin (Bleo)-induced ALI in rats exhibited significantly more spontaneous premature ventricular contractions (PVCs) from… read more here.
Keywords: rna seq; physiology; seq analysis; cardiac tissues ... See more keywords
An RNA-Seq analysis of the peach transcriptome with a focus on genes associated with skin colour
Sign Up to like & getrecommendations! Published in 2019 at "Czech Journal of Genetics and Plant Breeding"
DOI: 10.17221/90/2018-cjgpb
Abstract: Red pigmentation of the skin is an important consumer trait in peach (Prunus persica). The pigment consists largely of anthocyanin. Here, a transcriptomic contrast, based on RNA-Seq technology, was drawn between a white-skinned (Feitao) and… read more here.
Keywords: seq; analysis peach; rna seq; seq analysis ... See more keywords
A Preliminary Single-Cell RNA-Seq Analysis of Embryonic Cells That Express Brachyury in the Amphioxus, Branchiostoma japonicum
Sign Up to like & getrecommendations! Published in 2021 at "Frontiers in Cell and Developmental Biology"
DOI: 10.3389/fcell.2021.696875
Abstract: Among chordate taxa, the cephalochordates diverged earlier than urochordates and vertebrates; thus, they retain unique, primitive developmental features. In particular, the amphioxus notochord has muscle-like properties, a feature not seen in urochordates or vertebrates. Amphioxus… read more here.
Keywords: single cell; seq analysis; brachyury; expression ... See more keywords