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   Articles with "seq rna" as a keyword



Integrating Iso-seq and RNA-seq data for the reannotation of the greater amberjack genome

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recommendations! Published in 2024 at "Scientific Data"

DOI: 10.1038/s41597-024-03495-7

Abstract: The greater amberjack is a very important fishery species with high commercial value, and it is distributed worldwide. Transcriptome-based studies on S. dumerili have been limited by an inadequate reference genome and a lack of… read more here.

Keywords: seq data; greater amberjack; rna seq; seq ... See more keywords
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RNA-Seq: RNA Conversion to cDNA and Amplification.

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recommendations! Published in 2017 at "Cold Spring Harbor protocols"

DOI: 10.1101/pdb.prot094672

Abstract: The Ovation RNA-Seq Kit provides a fast and simple method for preparing amplified cDNA from total RNA. Amplification is initiated both at the 3' ends of the transcripts and across the entire range of transcribed… read more here.

Keywords: rna conversion; seq rna; rna; cdna ... See more keywords

STAT3 Facilitates Super Enhancer Formation to Promote Fibroblast‐To‐Myofibroblast Differentiation by the Analysis of ATAC‐Seq, RNA‐Seq and ChIP‐Seq

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recommendations! Published in 2025 at "Journal of Cellular and Molecular Medicine"

DOI: 10.1111/jcmm.70639

Abstract: A cellular characteristic of IPF is the transformation of fibrosis into myofibroblasts. This study identifies several transcription factors—STAT3, FOXP1, JUNB, ATF3, FosL2, BATF, Fra2 and AP‐1—that play crucial roles in promoting pulmonary fibrogenesis. They achieve… read more here.

Keywords: differentiation; chip seq; atac seq; seq ... See more keywords

Integrated ATAC‐seq and RNA‐seq data analysis identifies transcription factors related to rice stripe virus infection in Oryza sativa

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recommendations! Published in 2024 at "Molecular Plant Pathology"

DOI: 10.1111/mpp.13446

Abstract: Abstract Animal studies have shown that virus infection causes changes in host chromatin accessibility, but little is known about changes in chromatin accessibility of plants infected by viruses and its potential impact. Here, rice infected… read more here.

Keywords: atac seq; rice; rna seq; infection ... See more keywords

Effects of the Zbtb1 Gene on Chromatin Spatial Structure and Lymphatic Development: Combined Analysis of Hi-C, ATAC-Seq and RNA-Seq

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recommendations! Published in 2022 at "Frontiers in Cell and Developmental Biology"

DOI: 10.3389/fcell.2022.874525

Abstract: Zbtb1 (zinc finger and BTB domain containing 1) is a member of mammalian zbtb gene family. A series of bioinformatics analysis was carried out for the EL4 cell and the Zbtb1-deficient EL4 cell by Hi-C,… read more here.

Keywords: atac seq; structure; seq; rna seq ... See more keywords

Identification of potential models for predicting progestin insensitivity in patients with endometrial atypical hyperplasia and endometrioid endometrial cancer based on ATAC-Seq and RNA-Seq integrated analysis

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recommendations! Published in 2022 at "Frontiers in Genetics"

DOI: 10.3389/fgene.2022.952083

Abstract: Objective: The aim of this study was to establish predictive models based on the molecular profiles of endometrial lesions, which might help identify progestin-insensitive endometrial atypical hyperplasia (EAH) or endometrioid endometrial cancer (EEC) patients before… read more here.

Keywords: atac seq; seq; rna seq; seq rna ... See more keywords

Integration of ATAC-seq and RNA-seq analysis identifies key genes affecting intramuscular fat content in pigs

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recommendations! Published in 2022 at "Frontiers in Nutrition"

DOI: 10.3389/fnut.2022.1016956

Abstract: Meat quality is one of the most important economic traits in pig breeding and production, and intramuscular fat (IMF) content is the major factor in improving meat quality. The IMF deposition in pigs is influenced… read more here.

Keywords: atac seq; seq; imf; rna seq ... See more keywords

Integrating BSA-Seq with RNA-Seq Reveals a Novel Fasciated Ear5 Mutant in Maize

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recommendations! Published in 2023 at "International Journal of Molecular Sciences"

DOI: 10.3390/ijms24021182

Abstract: Increasing grain yield is required to meet the rapidly expanding demands for food, feed, and fuel. Inflorescence meristems are central to plant growth and development. However, the question concerning whether inflorescence development can be regulated… read more here.

Keywords: seq; rna seq; seq rna; integrating bsa ... See more keywords