Sequence analysis‐based characterization and identification of neurovirulence‐associated variants of 36 EV71 strains from China
Sign Up to like & getrecommendations! Published in 2018 at "Journal of Medical Virology"
DOI: 10.1002/jmv.25081
Abstract: Enterovirus 71 (EV71) is the main pathogen of hand‐foot‐mouth disease (HFMD) and causes several neurological complications. As new strains of EV71 are constantly discovered, it is important to understand the genomic characteristics of the viruses… read more here.
Keywords: amino acid; neurovirulence; analysis; sequence analysis ... See more keywords
Sequence analysis of the DA domain of glycoprotein E2 of pestiviruses isolated from beef cattle in Southern Brazil.
Sign Up to like & getrecommendations! Published in 2021 at "Archives of virology"
DOI: 10.1007/s00705-020-04910-1
Abstract: The envelope glycoprotein E2 of pestiviruses is a major target for neutralizing antibodies. In this study, we analyzed the E2 DA domain of 43 pestiviruses from Southern Brazil. The isolates were identified as Bovine viral… read more here.
Keywords: glycoprotein pestiviruses; southern brazil; sequence analysis; bvdv isolates ... See more keywords
Multilocus sequence analysis supports a low genetic diversity among ‘Candidatus Phytoplasma australasia’ related strains infecting vegetable crops and periwinkle in Egypt
Sign Up to like & getrecommendations! Published in 2017 at "European Journal of Plant Pathology"
DOI: 10.1007/s10658-017-1311-9
Abstract: Abstract‘Candidatus Phytoplasma australasia’ causes important damages to the Egyptian vegetable crop production. A prerequisite for controlling the different diseases it causes to eggplant, tomato and squash, is to trace its propagation pathways. To allow the… read more here.
Keywords: phytoplasma australasia; diversity; candidatus phytoplasma; sequence analysis ... See more keywords
Nucleotide sequence analysis of S-locus genes to unify S haplotype nomenclature in radish
Sign Up to like & getrecommendations! Published in 2018 at "Molecular Breeding"
DOI: 10.1007/s11032-018-0874-2
Abstract: Radish, belonging to the family Brassicaceae, has a self-incompatibility which is controlled by multiple alleles on the S locus. To employ the self-incompatibility in an F1 breeding system, identification of S haplotypes is necessary. Since… read more here.
Keywords: haplotype names; nucleotide sequence; genes unify; sequence analysis ... See more keywords
Representation learning applications in biological sequence analysis
Sign Up to like & getrecommendations! Published in 2021 at "Computational and Structural Biotechnology Journal"
DOI: 10.1016/j.csbj.2021.05.039
Abstract: Although remarkable advances have been reported in high-throughput sequencing, the ability to aptly analyze a substantial amount of rapidly generated biological (DNA/RNA/protein) sequencing data remains a critical hurdle. To tackle this issue, the application of… read more here.
Keywords: sequence analysis; representation learning; biological sequence;
Genetic Profiling of Equid Hybrids Using PCR‐RFLP and Partial Sequence Analysis of Cytochrome b Gene: Forensic Implication
Sign Up to like & getrecommendations! Published in 2017 at "Journal of Equine Veterinary Science"
DOI: 10.1016/j.jevs.2017.02.014
Abstract: Abstract Horse (Equus caballus) and donkey (Equus asinus) species have been domesticated since about 6,000 years. The crossbreeding between horse and donkey gives mule (female horse × male donkey) and hinny (female donkey × male… read more here.
Keywords: restriction; horse; sequence analysis; donkey ... See more keywords
FastPCR: An in silico tool for fast primer and probe design and advanced sequence analysis.
Sign Up to like & getrecommendations! Published in 2017 at "Genomics"
DOI: 10.1016/j.ygeno.2017.05.005
Abstract: Polymerase chain reaction (PCR) is one of the most important laboratory techniques used in molecular biology, genetics and molecular diagnostics. The success of a PCR-based method largely depends on the correct nucleic acid sequence analysis… read more here.
Keywords: sequence analysis; primer probe; software; probe ... See more keywords
MicroRNA sequence analysis identifies microRNAs associated with peri-implantitis in dogs
Sign Up to like & getrecommendations! Published in 2017 at "Bioscience Reports"
DOI: 10.1042/bsr20170768
Abstract: Peri-implantitis, which is characterized by dense inflammatory infiltrates and increased osteoclast activity, can lead to alveolar bone destruction and implantation failure. miRNAs participate in the regulation of various inflammatory diseases, such as periodontitis and osteoporosis.… read more here.
Keywords: sequence analysis; implantitis; peri implantitis;
Does the Type and Timing of Educational Attainment Influence Physical Health? A Novel Application of Sequence Analysis.
Sign Up to like & getrecommendations! Published in 2020 at "American journal of epidemiology"
DOI: 10.1093/aje/kwaa150
Abstract: Non-traditional education trajectories are common, but their influence on physical health is understudied. We constructed year-by-year education trajectories for 7,501 National Longitudinal Survey of Youth 1979 participants, from age 14 to 48 (262,535 person-years of… read more here.
Keywords: physical health; sequence analysis; influence physical; type timing ... See more keywords
Semi-supervised learning of Hidden Markov Models for biological sequence analysis
Sign Up to like & getrecommendations! Published in 2019 at "Bioinformatics"
DOI: 10.1093/bioinformatics/bty910
Abstract: Motivation Hidden Markov Models (HMMs) are probabilistic models widely used in applications in computational sequence analysis. HMMs are basically unsupervised models. However, in the most important applications, they are trained in a supervised manner. Training… read more here.
Keywords: hidden markov; semi supervised; sequence analysis; markov models ... See more keywords
Collagen Sequence Analysis Reveals Evolutionary History of Extinct West Indies Nesophontes (Island-Shrews)
Sign Up to like & getrecommendations! Published in 2020 at "Molecular Biology and Evolution"
DOI: 10.1093/molbev/msaa137
Abstract: Abstract Ancient biomolecule analyses are proving increasingly useful in the study of evolutionary patterns, including extinct organisms. Proteomic sequencing techniques complement genomic approaches, having the potential to examine lineages further back in time than achievable… read more here.
Keywords: collagen; analysis reveals; collagen sequence; sequence analysis ... See more keywords