Articles with "sequence dependent" as a keyword



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Mechanisms of RNA export and nuclear retention

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Published in 2022 at "Wiley Interdisciplinary Reviews: RNA"

DOI: 10.1002/wrna.1755

Abstract: With the identification of huge amount of noncoding RNAs in recent years, the concept of RNA localization has extended from traditional mRNA export to RNA export of mRNA and ncRNA as well as nuclear retention… read more here.

Keywords: mechanisms rna; nuclear retention; rna export; sequence dependent ... See more keywords
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A worm optimization algorithm to minimize the makespan on unrelated parallel machines with sequence-dependent setup times

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Published in 2020 at "Annals of Operations Research"

DOI: 10.1007/s10479-019-03138-w

Abstract: This paper addresses the unrelated parallel machine scheduling problem with setup times, with an objective of minimizing the makespan. The machines are unrelated in the sense that the processing speed depends on the job being… read more here.

Keywords: worm optimization; dependent setup; setup times; unrelated parallel ... See more keywords
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[I041] Spatial distortions in MRI

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Published in 2018 at "Physica Medica"

DOI: 10.1016/j.ejmp.2018.06.113

Abstract: Purpose MR images inherently suffer from spatial distortions. Spatial distortions play an important role particularly in quantitative MRI, where MRI parameters are employed as quantitative biomarkers, and in MRI-based treatment planning for advanced radiotherapy applications,… read more here.

Keywords: dependent distortions; field; spatial distortions; mri ... See more keywords
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A Pareto-discrete hummingbird algorithm for partial sequence-dependent disassembly line balancing problem considering tool requirements

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Published in 2021 at "Journal of Manufacturing Systems"

DOI: 10.1016/j.jmsy.2021.07.005

Abstract: Abstract To reduce the disassembly costs to enterprises and improve the disassembly efficiency of waste products, this study proposed a partial sequence-dependent disassembly line balancing problem (PSD-DLBP) and established a multi-objective mathematical model to simultaneously… read more here.

Keywords: partial sequence; line; disassembly line; dependent disassembly ... See more keywords
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Dynamic Basis for dG•dT misincorporation via tautomerization and ionization

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Published in 2018 at "Nature"

DOI: 10.1038/nature25487

Abstract: Tautomeric and anionic Watson–Crick-like mismatches have important roles in replication and translation errors through mechanisms that are not fully understood. Here, using NMR relaxation dispersion, we resolve a sequence-dependent kinetic network connecting G•T/U wobbles with… read more here.

Keywords: misincorporation; sequence dependent; dynamic basis; tautomerization ionization ... See more keywords
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Luminescent sequence-dependent materials through a step by step assembly of RE1–1,4-benzendicarboxylate–RE2 (REx = Y3+, Eu3+ and Tb3+) architectures on a silica surface

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Published in 2019 at "Journal of Materials Chemistry C"

DOI: 10.1039/c9tc00181f

Abstract: Stepwise assembly on a silica surface of ordered sequences of rare earth cations (Y3+, Eu3+, Tb3+) connected by the 1,4-benzenedicarboxylate ligand affords sequence-dependent luminescence properties. read more here.

Keywords: silica surface; sequence dependent; luminescent sequence; eu3 tb3 ... See more keywords
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Sequence-dependent thymine dimerization and lifetimes of the photoexcited state of oligonucleotides.

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Published in 2022 at "Chemical communications"

DOI: 10.1039/d2cc03902h

Abstract: DNA-sequence-dependent thymine-thymine (TT) dimerization was investigated from the perspective of the UV-induced charge transfer state. Steady-state and transient absorption measurements suggest that the relatively small oxidation potential and long-lived charge transfer state at the neighboring… read more here.

Keywords: thymine; state; sequence dependent; dependent thymine ... See more keywords
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Sequence-dependent quenching of fluorescein fluorescence on single-stranded and double-stranded DNA

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Published in 2022 at "RSC Advances"

DOI: 10.1039/d2ra00534d

Abstract: Fluorescein is commonly used to label macromolecules, particularly proteins and nucleic acids, but its fluorescence is known to be strongly dependent on its direct chemical environment. In the case of fluorescein-labeled nucleic acids, nucleobase-specific quenching… read more here.

Keywords: stranded dna; double stranded; fluorescence; sequence ... See more keywords
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An optimal algorithm for selective disassembly sequencing with sequence-dependent set-ups in parallel disassembly environment

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Published in 2017 at "International Journal of Production Research"

DOI: 10.1080/00207543.2017.1342879

Abstract: This study considers selective disassembly sequencing in parallel disassembly environment in which two or more components can be removed by a single disassembly operation. The problem is to determine the sequence of disassembly operations to… read more here.

Keywords: parallel disassembly; disassembly sequencing; disassembly environment; selective disassembly ... See more keywords
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Heuristics to optimize total completion time subject to makespan in no-wait flow shops with sequence-dependent setup times

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Published in 2022 at "Journal of the Operational Research Society"

DOI: 10.1080/01605682.2022.2039569

Abstract: Abstract We propose four algorithms for the no-wait flow shop scheduling problem. The objective is minimizing total completion time such that makespan is not greater than a maximum value. We address the problem with sequence-dependent… read more here.

Keywords: wait flow; completion time; sequence dependent; setup times ... See more keywords
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Sequence-dependent dynamics of synthetic and endogenous RSSs in V(D)J recombination

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Published in 2020 at "Nucleic Acids Research"

DOI: 10.1093/nar/gkaa418

Abstract: Abstract Developing lymphocytes of jawed vertebrates cleave and combine distinct gene segments to assemble antigen–receptor genes. This process called V(D)J recombination that involves the RAG recombinase binding and cutting recombination signal sequences (RSSs) composed of… read more here.

Keywords: dependent dynamics; rag; synthetic endogenous; recombination ... See more keywords