Phylogenetic significance of the characteristics of simple sequence repeats at the genus level based on the complete chloroplast genome sequences of Cyatheaceae
Sign Up to like & getrecommendations! Published in 2021 at "Ecology and Evolution"
DOI: 10.1002/ece3.8151
Abstract: Abstract The simple sequence repeats (SSRs) of plant chloroplasts show considerable genetic variation and have been widely used in species identification and phylogenetic relationship determination. Whether chloroplast genome SSRs can be used to classify Cyatheaceae… read more here.
Keywords: chloroplast; simple sequence; chloroplast genome; genus level ... See more keywords
A pipeline for effectively developing highly polymorphic simple sequence repeats markers based on multi‐sample genomic data
Sign Up to like & getrecommendations! Published in 2022 at "Ecology and Evolution"
DOI: 10.1002/ece3.8705
Abstract: Abstract Simple sequence repeats (SSRs) are widely used genetic markers in ecology, evolution, and conservation even in the genomics era, while a general limitation to their application is the difficulty of developing polymorphic SSR markers.… read more here.
Keywords: simple sequence; highly polymorphic; sequence repeats; genomic data ... See more keywords
Implications of genome simple sequence repeats signature in 98 Polyomaviridae species
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DOI: 10.1007/s13205-020-02583-w
Abstract: The analysis of simple sequence repeats (SSRs) in 98 genomes across four genera of the family Polyomaviridae was performed. The genome size ranged from 3962 (BM87) to 7369 bp (BM85) but maximum genomes were in the… read more here.
Keywords: implications genome; simple sequence; repeats signature; genome simple ... See more keywords
RepEx: A web server to extract sequence repeats from protein and DNA sequences
Sign Up to like & getrecommendations! Published in 2019 at "Computational biology and chemistry"
DOI: 10.1016/j.compbiolchem.2018.12.015
Abstract: Evolution builds up new genetic material from existing ones, not in random, but in highly ordered and eloquent patterns. Most of these sequence repeats are revelatory of valuable information contributing to areas of disease research… read more here.
Keywords: server extract; web server; repex web; sequence repeats ... See more keywords
In-silico-mining of small sequence repeats in hydrogenase maturation subunits of E. coli, clostridium, and Rhodobacter
Sign Up to like & getrecommendations! Published in 2019 at "International Journal of Hydrogen Energy"
DOI: 10.1016/j.ijhydene.2019.05.057
Abstract: Abstract Presently, the world is facing energy crisis so there is a strong need of in silico mining and analysis of potential bacteria leading to renewable energy generation i.e. bio hydrogen production using bio-wastes as… read more here.
Keywords: coli clostridium; maturation; sequence repeats; rhodobacter ... See more keywords
Short sequence repeats of the intergenic spacer regions of ribosomal RNA genes in Malassezia globosa and Malassezia restricta colonizing the scalps of male individuals with and without androgenetic alopecia
Sign Up to like & getrecommendations! Published in 2022 at "Microbiology and Immunology"
DOI: 10.1111/1348-0421.12979
Abstract: We analyzed the short sequence repeats (SSRs) of the intergenic spacer (IGS) region 1 of the ribosomal RNA genes in Malassezia globosa and Malassezia restricta, which predominantly colonize the scalp in androgenetic alopecia (AGA). No… read more here.
Keywords: ribosomal rna; restricta; sequence repeats; intergenic spacer ... See more keywords
A deeper view into the significance of simple sequence repeats in pre-miRNAs provides clues for its possible roles in determining the function of microRNAs
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DOI: 10.1186/s12863-018-0615-x
Abstract: BackgroundThe central tenet of ‘genome content’ has been that the ‘non-coding’ parts are highly enriched with ‘microsatellites’ or ‘Simple Sequence Repeats’ (SSRs). We presume that the presence and change in number of repeat unit (n)… read more here.
Keywords: pre mirnas; ssrs; simple sequence; function ... See more keywords
Mining of simple sequence repeats (SSRs) loci and development of novel transferability-across EST-SSR markers from de novo transcriptome assembly of Angelica dahurica
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DOI: 10.1371/journal.pone.0221040
Abstract: Angelica dahurica is a widely grown plant species with multiple uses, especially in the medical field. However, the frequent introduction of A. dahurica to new areas has made it difficult to distinguish between varieties. Simple… read more here.
Keywords: ssr; repeats ssrs; simple sequence; angelica dahurica ... See more keywords
The First Molecular Identification of an Olive Collection Applying Standard Simple Sequence Repeats and Novel Expressed Sequence Tag Markers
Sign Up to like & getrecommendations! Published in 2017 at "Frontiers in Plant Science"
DOI: 10.3389/fpls.2017.01283
Abstract: Germplasm collections of tree crop species represent fundamental tools for conservation of diversity and key steps for its characterization and evaluation. For the olive tree, several collections were created all over the world, but only… read more here.
Keywords: simple sequence; olive collection; standard simple; collection ... See more keywords
Genome Wide Characterization, Comparative and Genetic Diversity Analysis of Simple Sequence Repeats in Cucurbita Species
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DOI: 10.3390/horticulturae7060143
Abstract: Simple sequence repeats (SSRs) are widely used in mapping constructions and comparative and genetic diversity analyses. Here, 103,056 SSR loci were found in Cucurbita species by in silico PCR. In general, the frequency of these… read more here.
Keywords: genetic diversity; cucurbita species; sequence repeats; simple sequence ... See more keywords