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   Articles with "sequencing gbs" as a keyword



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Single nucleotide polymorphism (SNP) discovery through genotyping-by-sequencing (GBS) and genetic characterization of Dendrobium mutants and cultivars

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recommendations! Published in 2019 at "Scientia Horticulturae"

DOI: 10.1016/j.scienta.2018.09.053

Abstract: Abstract Dendrobium plants are the most important orchids used in horticultural industries and oriental medicine. Recently, several Dendrobium mutant genotypes with improved horticultural traits have been developed using various mutagens such as gamma irradiation, somaclonal… read more here.

Keywords: nucleotide polymorphism; single nucleotide; dendrobium; genotyping sequencing ... See more keywords
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Optimizing imputation of marker data from genotyping-by-sequencing (GBS) for genomic selection in non-model species: Rubber tree (Hevea brasiliensis) as a case study.

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recommendations! Published in 2021 at "Genomics"

DOI: 10.1016/j.ygeno.2021.01.012

Abstract: Genotyping-by-sequencing (GBS) provides the marker density required for genomic predictions (GP). However, GBS gives a high proportion of missing SNP data which, for species without a chromosome-level genome assembly, must be imputed without knowing the… read more here.

Keywords: imputation; genotyping sequencing; rubber tree; sequencing gbs ... See more keywords
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A bumper crop of SNPs in soybean through high‐density genotyping‐by‐sequencing (HD‐GBS)

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recommendations! Published in 2021 at "Plant Biotechnology Journal"

DOI: 10.1111/pbi.13551

Abstract: Genome-wide association studies (GWAS) have revolutionized the investigation of complex traits over the past decade and have unveiled numerous useful genotype-phenotype associations. To be comprehensive, GWAS can require identifying and genotyping hundreds of thousands to… read more here.

Keywords: genome wide; high density; genotyping sequencing; sequencing gbs ... See more keywords
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VCF2CAPS–A high-throughput CAPS marker design from VCF files and its test-use on a genotyping-by-sequencing (GBS) dataset

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recommendations! Published in 2021 at "PLoS Computational Biology"

DOI: 10.1371/journal.pcbi.1008980

Abstract: Next-generation sequencing (NGS) is a powerful tool for massive detection of DNA sequence variants such as single nucleotide polymorphisms (SNPs), multi-nucleotide polymorphisms (MNPs) and insertions/deletions (indels). For routine screening of numerous samples, these variants are… read more here.

Keywords: caps marker; caps markers; genotyping sequencing; sequencing gbs ... See more keywords
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Diversity in Grain Amaranths and Relatives Distinguished by Genotyping by Sequencing (GBS)

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recommendations! Published in 2017 at "Frontiers in Plant Science"

DOI: 10.3389/fpls.2017.01960

Abstract: The genotyping by sequencing (GBS) method has become a molecular marker technology of choice for many crop plants because of its simultaneous discovery and evaluation of a large number of single nucleotide polymorphisms (SNPs) and… read more here.

Keywords: grain amaranths; diversity; genotyping sequencing; sequencing gbs ... See more keywords