Environmental resistome risks of wastewaters and aquatic environments deciphered by shotgun metagenomic assembly.
Sign Up to like & getrecommendations! Published in 2020 at "Ecotoxicology and environmental safety"
DOI: 10.1016/j.ecoenv.2020.110612
Abstract: In this paper, we deciphered the core resistome disseminating from hospital wastewater to the aquatic environment by characterising the resistome, plasmidome, mobilome and virulome using metagenomic analysis. This study also elucidated different environmental resistome risks… read more here.
Keywords: environmental resistome; resistome risks; shotgun metagenomic; wastewater ... See more keywords
Toward shotgun metagenomic approaches for microbial source tracking sewage spills based on laboratory mesocosms.
Sign Up to like & getrecommendations! Published in 2021 at "Water research"
DOI: 10.1016/j.watres.2021.117993
Abstract: Little is known about the genomic diversity of the microbial communities associated with raw municipal wastewater (sewage), including whether microbial populations specific to sewage exist and how such populations could be used to improve source… read more here.
Keywords: metagenomic approaches; approaches microbial; source; shotgun metagenomic ... See more keywords
synDNA—a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing
Sign Up to like & getrecommendations! Published in 2022 at "mSystems"
DOI: 10.1128/msystems.00447-22
Abstract: The synDNAs designed in this study enable accurate and reproducible measurements of absolute amount and fold changes of bacterial species in complex microbial communities. The method proposed here is versatile and promising as it can… read more here.
Keywords: dna; shotgun metagenomic; spike; microbial communities ... See more keywords
Whole-Genome Shotgun Metagenomic Sequencing Reveals Distinct Gut Microbiome Signatures of Obese Cats
Sign Up to like & getrecommendations! Published in 2022 at "Microbiology Spectrum"
DOI: 10.1128/spectrum.00837-22
Abstract: Obesity affects around 45% of domestic cats, and licensed drugs for treating feline obesity are lacking. Physical exercise and calorie restrictions are commonly used for weight loss but with limited efficacy. ABSTRACT Overweight and obesity… read more here.
Keywords: whole genome; microbiome; obesity; shotgun metagenomic ... See more keywords
Shotgun metagenomic sequencing in culture negative microbial keratitis.
Sign Up to like & getrecommendations! Published in 2023 at "European journal of ophthalmology"
DOI: 10.1177/11206721221149077
Abstract: PURPOSE To evaluate the microbiota of culture negative Corneal Impression Membrane (CIM) microbial keratitis samples with the use of shotgun metagenomics analysis. METHODS DNA of microbial keratitis samples were collected with CIM and extracted using… read more here.
Keywords: shotgun metagenomic; keratitis; microbial keratitis; culture negative ... See more keywords
Combining vertebrate mitochondrial 12S rRNA gene sequencing and shotgun metagenomic sequencing to investigate the diet of the leopard cat (Prionailurus bengalensis) in Korea
Sign Up to like & getrecommendations! Published in 2023 at "PLOS ONE"
DOI: 10.1371/journal.pone.0281245
Abstract: The leopard cat (Prionailurus bengalensis), an endangered species in South Korea, is a small feline widely distributed in Asia. Here, we investigated the diet of leopard cats in the inland areas of Korea by examining… read more here.
Keywords: 12s rrna; shotgun metagenomic; mitochondrial 12s; vertebrate mitochondrial ... See more keywords
Comparative Analysis of 16S rRNA Gene and Metagenome Sequencing in Pediatric Gut Microbiomes
Sign Up to like & getrecommendations! Published in 2021 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2021.670336
Abstract: The colonization of the human gut microbiome begins at birth, and over time, these microbial communities become increasingly complex. Most of what we currently know about the human microbiome, especially in early stages of development,… read more here.
Keywords: comparative analysis; gut; analysis 16s; metagenomic sequencing ... See more keywords
Characterizing a subtropical hypereutrophic lake: From physicochemical variables to shotgun metagenomic data
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2022.1037626
Abstract: Lake Cajititlán is a subtropical and endorheic lake, which is heavily impacted by nutrient pollution. Agricultural runoff and poorly treated wastewater have entered this reservoir at alarming rates during past rainy seasons, causing the cultural… read more here.
Keywords: physicochemical variables; shotgun metagenomic; water quality; subtropical hypereutrophic ... See more keywords